Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., Sigma-24 from Alteromonas macleodii MIT1002

 Score =  288 bits (736), Expect = 5e-83
 Identities = 137/190 (72%), Positives = 168/190 (88%)

Query: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60
           M+EQ+TDQ L+E+VQ GDK AFNLLV RYQ+KV +L+SRYV N+GDVADV QEAFIKAYR
Sbjct: 1   MSEQITDQQLVEKVQRGDKNAFNLLVTRYQHKVMHLVSRYVKNTGDVADVTQEAFIKAYR 60

Query: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120
           A+P FRG+SAFYTWLYRIAVN+AKN++V+Q R+PPASDVDA+EA+FYEG DALKE S PE
Sbjct: 61  ALPNFRGDSAFYTWLYRIAVNSAKNYLVSQGRKPPASDVDADEADFYEGSDALKEQSTPE 120

Query: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180
              LS+E+++T+F  ++ LPDDL+ A+TLRE++GLSYEEIA VM CPVGTVRSRIFRARE
Sbjct: 121 RSLLSEEIEETLFKVVEKLPDDLRMAITLREIEGLSYEEIANVMSCPVGTVRSRIFRARE 180

Query: 181 AVEKKIKPLL 190
           A++K I+PLL
Sbjct: 181 AIDKVIQPLL 190