Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., Sigma-W factor from Alteromonas macleodii MIT1002

 Score = 88.2 bits (217), Expect = 8e-23
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66
           D+ L+E+   G+K+A+  L+ RY+  +     R   NS D AD+ QE FI  +R++  F+
Sbjct: 6   DEKLVEQALRGNKKAWFTLISRYETAMYQYGIRMTGNSHDAADLMQEIFISVFRSLACFK 65

Query: 67  GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLSK 126
           GE +F +WLYRIA       +    +R P SD+D  +A        L     PE    S 
Sbjct: 66  GEGSFKSWLYRIAHCRC---VELYRKRKPHSDIDDIQA-------PLCGAPCPEMQLYSD 115

Query: 127 ELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRA 178
              + +  A+  LP   K  + L+     ++EEIA+ MD  V T +SR++ A
Sbjct: 116 RESRALTQAMQTLPLCQKAVVELKFFGHFTFEEIAQQMDISVNTAKSRLYAA 167