Pairwise Alignments

Query, 212 a.a., sigma-E factor negative regulatory protein RseA from Vibrio cholerae E7946 ATCC 55056

Subject, 216 a.a., anti-sigma factor from Escherichia coli BL21

 Score =  155 bits (392), Expect = 5e-43
 Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 18/197 (9%)

Query: 10  KEKLSALMDGEMIDNELILGLAQDQDARDTWKNYHLIGDVLRGEAPIHKEWNIAESVALA 69
           KE+LSALMDGE +D+EL+  LA + + + TW++YHLI D +RG+ P    ++I+  V  A
Sbjct: 3   KEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEVLHFDISSRVMAA 62

Query: 70  LENEPAHNPLHHSTNVIDLQQARLEAQPKPQQAKR-----QLPAWLSQFGQVGIAACVSL 124
           +E EP   P      +I       EAQP P Q ++     ++  W +Q  Q+G+AACVSL
Sbjct: 63  IEEEPVRQP----ATLIP------EAQPAPHQWQKMPFWQKVRPWAAQLTQMGVAACVSL 112

Query: 125 AVIFGVQQYGGQS-SGVENELPVLQTIPLAGSAEPVSL--TRDSVEKHAPDSSMQEQRRR 181
           AVI GVQ Y GQS +  + E PV  T+P+ G A PVSL    ++   +     +QEQRRR
Sbjct: 113 AVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANNGQQQQVQEQRRR 172

Query: 182 VNALLQDYELQLRLNSE 198
           +NA+LQDYELQ RL+SE
Sbjct: 173 INAMLQDYELQRRLHSE 189