Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Sigma factor RpoE negative regulatory protein RseB precursor from Variovorax sp. SCN45

 Score = 83.2 bits (204), Expect = 8e-21
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 35/310 (11%)

Query: 30  LYQMNEASQHLNYELSYIL-VKKNSIEPLLYRHARQDDQQLAHLVYLSGPVREVIRRGDE 88
           L +M+  ++  NY  ++++      +      H R  D Q+  +  LSGP R   RR   
Sbjct: 7   LQRMHAGARQRNYVGTFVVSAPGGDLSSARIWHVRDGDHQIERIEALSGPPRSTFRRNRN 66

Query: 89  VSYIEPGVEPFTIESGNMVA--PTIPMLNTDVAELSRYYDFVKVGRAREAGAACQVLRVV 146
           V    P  +   +E    +   P +P  +   + +  +YD   +G+ R AG    V+++V
Sbjct: 67  VMTFLPEAKVVKVEKRENLDLFPNLP--DKPDSSIGDFYDVRAIGKDRVAGFDADVVQLV 124

Query: 147 PKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSV-----SERLAEIMAGLN 201
           P DGLR+ Y VW + +S L ++   +D +  V+EQ       +     ++ LA++MA  +
Sbjct: 125 PHDGLRFGYRVWSERRSGLVVKLQTVDSESRVVEQSAFSELQLDAPVKAQALAQMMANTS 184

Query: 202 KVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMEL-----------NRYRMAMTERLVESQ 250
             ++ E L+L + S Q+  W ++    GF+               N  +    +      
Sbjct: 185 GYRI-EKLELERSSAQDEGWTLSTPVAGFKPRSFFRRPPSGDSNNNGGKQKQQDATTVQW 243

Query: 251 MYSDGLFNFSVYVSASDNYSLKGQLVRQGRRTLHSV---------VKGENEISVVGDIPP 301
            +SDGL + S+++   D      +  R G  T+ +             +  ++ VG++P 
Sbjct: 244 TFSDGLASVSLFIERYD----AARAPRDGVLTIGATNAIRRRLPEPASDWWLTAVGEVPQ 299

Query: 302 ATAQRIAQSV 311
            T    AQS+
Sbjct: 300 QTLNAFAQSL 309