Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., Sigma factor RpoE negative regulatory protein RseB precursor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 69/292 (23%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 25  SAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQDDQQLAHLVYLSGPVREVIR 84
           S    L +M+EAS   +Y  + ++   +++      H     QQ+  +  L+G  R  IR
Sbjct: 53  SVNEWLTRMHEASNRRSYIGTLVVSAGSAMSASKIWHVCDGSQQMERVDTLTGAPRTTIR 112

Query: 85  RGDEVSYIEPGVEPFTIESGNMVAPTIPMLNTDVAELSRYYDFVKVGRAREAGAACQVLR 144
           R  EV    P  +   +E  + +     +L T    + ++Y   +VG  R AG    ++ 
Sbjct: 113 RNKEVITFVPEAKTAFVEKRDSLGMFPELLRTPNNLIPQFYSAREVGVQRVAGHLADMVE 172

Query: 145 VVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYRTISFSVS-----ERLAEIMAG 199
           ++P+D LR+ Y +W + ++ L ++   L   G V+EQ       +      E+L+++M  
Sbjct: 173 ILPRDDLRFGYRIWSERQTGLVVKLQTLGEQGAVMEQVAFSELQLDAPVSMEKLSKLMKD 232

Query: 200 LNKVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMELN-RYRMAMTERLVESQMYSDGLFN 258
               ++ +   L K + +   W++     GF AM  + R     +E+     ++SDGL +
Sbjct: 233 TRGYEVHKP-ALKKTTAEAEGWRLKEPVPGFAAMSCHTREAPGGSEQTSMQWVFSDGLAS 291

Query: 259 FSVYVSASD--NYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPATAQRIA 308
            S++V   D   ++ +         +++  V GE+ ++V+G++P AT +R A
Sbjct: 292 VSLFVEPFDAQRHTQEASATVGATNSVNRRV-GEHWLTVMGEVPVATLRRFA 342