Pairwise Alignments

Query, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., anti-sigma E factor, binds RseA from Escherichia coli BL21

 Score =  285 bits (728), Expect = 1e-81
 Identities = 146/312 (46%), Positives = 214/312 (68%), Gaps = 8/312 (2%)

Query: 5   LISALTLFCVNSTTAFAEEESAEALLYQMNEASQHLNYELSYILVKKNSIEPLLYRHARQ 64
           L++   LF  N++   A    + ALL QMN ASQ LNYELS+I + K  +E L YRHAR 
Sbjct: 10  LVTGSLLFSANASATPA----SGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65

Query: 65  DDQQLAHLVYLSGPVREVIRRGDEVSYIEPGVEPFTIESGNMVAPTIP-MLNTDVAELSR 123
           D++ LA L+ + GP REV++RG+E+SY EPG+EPFT+ +G+ +  ++P ++ TD   LS 
Sbjct: 66  DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL-NGDYIVDSLPSLIYTDFKRLSP 124

Query: 124 YYDFVKVGRAREAGAACQVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEVLEQYR 183
           YYDF+ VGR R A   C+V+RVV +DG RYSY+VW+D +S LP+R DLLDRDGE LEQ+R
Sbjct: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184

Query: 184 TISFSVSERLAEIMAGLNKVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMELNRYRMAMT 243
            I+F+V++ ++  M  L K  LP +L +P G   +  W  TW+P GF  +  +R  +   
Sbjct: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244

Query: 244 ERL-VESQMYSDGLFNFSVYVSASDNYSLKGQLVRQGRRTLHSVVKGENEISVVGDIPPA 302
           + + +ES++YSDGLF+FSV V+ +   S   Q++R GRRT+ + V+   EI++VG++PP 
Sbjct: 245 DNMPIESRLYSDGLFSFSVNVNRA-TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQ 303

Query: 303 TAQRIAQSVMFG 314
           TA+RIA+++ FG
Sbjct: 304 TAKRIAENIKFG 315