Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  550 bits (1417), Expect = e-160
 Identities = 352/937 (37%), Positives = 525/937 (56%), Gaps = 48/937 (5%)

Query: 1   MTQRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDA 60
           M  R G++ RV+ LTL PT ++  LL   F++ +  +L+TQ++  G  I E LA     A
Sbjct: 1   MLTRMGIKGRVLLLTLLPTSLMASLLGGYFTWMQLSELQTQLLQRGEMIAEQLAPLVAPA 60

Query: 61  LRMQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFL 120
           L  ++ E + RI + +  +    VR+++              H     L  P       L
Sbjct: 61  LSARNTELLERIATQSLEQPD--VRAVSFLSPERAPLA----HAGPTMLNQPPVGNSSHL 114

Query: 121 SSSVIDENTLILRTPIISERTVLDNGDANPATPVMGYIAIELDLSSLRLQQYQEIFSAGL 180
                ++ T  L       R +      + A  ++G++ +EL  + + L+ Y+ +F++ L
Sbjct: 115 LQRTGNDATRYLLPVFGRHRNLAGELIPDEADRLLGWVEVELSHNGMLLRGYRSLFASLL 174

Query: 181 VLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINA 240
           ++ IG++ +   A R+   +  PI  +K  V +++ G+L+ R+      ELD L  GIN 
Sbjct: 175 LIAIGLICTAALALRISRTINSPIGQIKQAVAQLKDGNLETRLPPLGSQELDQLASGINR 234

Query: 241 MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSH 300
           MA +L     E+QHSIDQAT D+R+ LE +EIQN+ELD+A+K A EA+R+KSEFLANMSH
Sbjct: 235 MAETLQNAQEELQHSIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSH 294

Query: 301 ELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALE 360
           E+RTPLNG++GFT  + K++LT  Q DYL TIEKSA+NLL IIN+ILDFSK+EAGKL L+
Sbjct: 295 EIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLD 354

Query: 361 NIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIK 420
           +IPF  +++L++ + + A +AH K LE+   +    P  +VGDPLR++Q+LTNL+ N+IK
Sbjct: 355 SIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLALVGDPLRLKQILTNLISNAIK 414

Query: 421 FTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480
           FT  G I     +   ++D + L+  V+DTGIG+S +    LFQAFSQAD S+SR+ GGT
Sbjct: 415 FTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGT 474

Query: 481 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLI 540
           GLGLVI+++L+  MGGEI + S   +GS FW +L L  T   + D  +A  L HR + ++
Sbjct: 475 GLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDVEDLPSAPLLGHR-VAVL 533

Query: 541 EPNMQAAAIVQQTLVQSGLEVT-----------YRSAIPEEQHVYDYVL---LNLAPSKE 586
           E +  A   +Q  L   GLEVT             SA   EQ +   VL    N  P + 
Sbjct: 534 ENHELARQALQHQLEDCGLEVTPFNSLESLTNGITSAHQTEQAIDLAVLGVTANDIPPER 593

Query: 587 TNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLA-A 645
            N     LW    L     V+V  P+TE  L +Q +     +  +KP   +KL + L+  
Sbjct: 594 LNQ---HLWDLEHLGC--KVLVLCPTTEQMLFNQSVPNPNSQLQAKPACTRKLRRALSDL 648

Query: 646 QQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ 705
             P+ + +   +P + + P  V+ VDDNPANL L+  LL++    V +  SG  AI+  +
Sbjct: 649 ISPRPSRSEPGEPLSSRAPR-VLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVK 707

Query: 706 SRQFDIILMDIQMPHMDGVTACKAIKQLKGYRD---TPVIAVTAHAMAGERDRLLKAGMD 762
              FD++LMD+QMP MDG  + +AI+Q +  R     PV+A+TAHAMA E+  LL++GMD
Sbjct: 708 QDTFDLVLMDVQMPGMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQSGMD 767

Query: 763 DYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVA 822
           DYLTKPI E  L QV++ W+      Q        G   +++ L   P  +  ++D    
Sbjct: 768 DYLTKPISERQLAQVVLKWTGLALRNQ--------GPERVADGL--GPGVQLPVLDHEEG 817

Query: 823 LRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVP 882
           LR +A K DLA +ML ML+  L      +  A +  +  A  L+  +H+LHG+  Y GVP
Sbjct: 818 LRLAAGKADLAADMLAMLLASLEADRLAITIARDANDNNA--LIERVHRLHGATRYCGVP 875

Query: 883 RLRKICASLEQALRNG-----ASIDELEPELFELQDE 914
           +LR  C   E  L+        ++DEL+  +  L  E
Sbjct: 876 QLRAACHRAETLLKQDDAKAQHALDELDMAIARLASE 912