Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  263 bits (672), Expect = 3e-74
 Identities = 183/580 (31%), Positives = 290/580 (50%), Gaps = 58/580 (10%)

Query: 1   MTQRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDA 60
           + +R+ +  R   +TL P L++ LLL + F+F R  DL  ++ ++G  I   LA A+E  
Sbjct: 3   LRRRWDINTRTQLITLGPALLLTLLLISFFTFVRIQDLRQELDHTGQLIANQLAPATEYG 62

Query: 61  LRMQSRE----SVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKP 116
           +   + +     +R  ++  H      VR + + D++  + V          +  P +K 
Sbjct: 63  VISGNNDVLDSLLRATLATPH------VRFLEIQDSSENILV---------YVEQPSEKH 107

Query: 117 IPFLSSSVIDENTLILRTPIISERTVLDNG--------DANPATPVMGYIAIELDLSSLR 168
              LS  V        + PI  +   L N            P    +G + + +   +  
Sbjct: 108 DRSLSVKV-------FQAPIRLQHIQLGNDFFQDNLNESKAPRADYLGRVIVGMSNDAFS 160

Query: 169 LQQYQEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMH 228
            +Q + +F AG++ +  +L + + A RL   +++PI+ M + V  I++G     +     
Sbjct: 161 QRQQEILFKAGILALFALLFTFLLARRLAASLSQPISAMGHAVKAIQQGDYKTPLPIVDD 220

Query: 229 GELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAA 288
            EL  L + IN +A  L++   E Q    QA + L +T E+              A+ A 
Sbjct: 221 SELGDLSRHINNLAEGLNQASREQQ----QAMAQLIQTREE--------------AERAN 262

Query: 289 RVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILD 348
             KS+FLA MSHELRTP+NGV+G  + +  T++T  Q +Y     +S  +LL +INDILD
Sbjct: 263 NAKSDFLAMMSHELRTPMNGVLGMLQLLETTEMTEEQTEYAALASESTEHLLKVINDILD 322

Query: 349 FSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPR-GVVGDPLRI 407
           FS++E   L LE+IPF   +++         SA ++GL + L I P +    V GDP RI
Sbjct: 323 FSRIERAALELEHIPFNLADLINSCAQAFQHSAQQRGLALELSIPPGMDTLRVQGDPTRI 382

Query: 408 QQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFS 467
           +Q+L NL+GN++KFTE GN+ +    + L  +++     VRD+GIGIS  +   +F AF 
Sbjct: 383 RQILVNLIGNALKFTEHGNVSIEPHWQTLDHELVWFTCTVRDSGIGISAERLELMFDAFQ 442

Query: 468 QADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRL----HTTELPL 523
           QAD+SISRRYGGTGLGL I + L   MGG +   S   +GS F   + L    H+     
Sbjct: 443 QADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSEEARGSVFTLEIPLAIDQHSVPAIA 502

Query: 524 NDGYNADSL-NHRHLLLIEPNMQAAAIVQQTLVQSGLEVT 562
           +D        + RH+LL+E N    A+V+  L   G EV+
Sbjct: 503 SDADGKTGAGDGRHVLLVEDNPVNRAVVEAMLRSLGFEVS 542



 Score =  101 bits (252), Expect = 1e-25
 Identities = 52/115 (45%), Positives = 73/115 (63%)

Query: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTA 726
           V+ V+DNP N  ++ A+L+     V   T G EAI  A+S  F  ILMD ++P +DG  A
Sbjct: 517 VLLVEDNPVNRAVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAILMDCRLPVIDGYEA 576

Query: 727 CKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
            + I+QL G  D P+IA+TA+A+ G+R+  L AGM+DYL KP +   LQQ+L  W
Sbjct: 577 TRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQILQRW 631