Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (860), Expect = 9e-96
 Identities = 226/653 (34%), Positives = 351/653 (53%), Gaps = 32/653 (4%)

Query: 263  LRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLT 322
            L +  E+ E+++ EL  AK+ A   ++ K +FLANMSHE+RTP+N ++G     L T L 
Sbjct: 580  LLDMTERKEMED-ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLD 638

Query: 323  NSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAH 382
             +Q  Y+  I +SA NLL IINDILDFSK+EAGKL +E I F   +VL+ V  + +  A 
Sbjct: 639  TTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698

Query: 383  EKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVID 442
            EKG+E  + IDP IP G++GDPLR+ QV+ NL GN++KFT +G I +S  +  L +  + 
Sbjct: 699  EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVT 758

Query: 443  LQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502
            L+F V+DTGIGI++ +   LF AFSQAD SI+R+YGGTGLGL I+++LV  MGG+I++ S
Sbjct: 759  LRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHS 818

Query: 503  RLHQGSTFWFTLRLHTTELPLND-GYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV 561
               +GSTF F++     +  + D       L  + +L+++ N  A  I+   L      V
Sbjct: 819  EEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNV 878

Query: 562  TYRS----AIPE-EQHVYDYVLLNL-APSKETNPTLVELWVQRALAMTHNVIVGVPSTEL 615
               S    A+ E +Q  +D + ++   P       L  +          + +V     E+
Sbjct: 879  VTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREI 938

Query: 616  ALADQLMQRYPVKCISKPLSRKKLLQTLAAQQ-----PQLANTSLPKPQADKLPLCVMAV 670
             L D    +     I KP++   LL  +             N +    + +     ++ V
Sbjct: 939  NL-DGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSLLLV 997

Query: 671  DDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAI 730
            +DN  N ++   LLQ+    VV    GQEA+E+ +   FD++LMD+QMP MDG+TA + I
Sbjct: 998  EDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHI 1057

Query: 731  KQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQV 790
            +    +   P++A+TA+AMA + +R L+AGM+D+L+KPIE     QVL H+   +  +  
Sbjct: 1058 RANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQSF 1117

Query: 791  AKVTPPDGAAVISNALPSSPPAEEAIIDWP----VALRQS----ANKEDLAKEMLGMLVD 842
            +  +P        N   +S PA  A++D P    V L Q+       +    E+L   +D
Sbjct: 1118 SSHSP--------NKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFID 1169

Query: 843  YLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQAL 895
               +    V   +E +++  S      H L GS +  G+  L ++ A +EQ+L
Sbjct: 1170 SQVDELNSVTGLIEAQDW--SSATRVAHTLKGSAANLGLEALAQLAAEMEQSL 1220