Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  257 bits (657), Expect = 1e-72
 Identities = 188/575 (32%), Positives = 295/575 (51%), Gaps = 58/575 (10%)

Query: 5   YGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRMQ 64
           + +  R   ++L P L++ LLL + F+F R  DL  ++ ++G  I   LA ASE  +   
Sbjct: 7   WDIHTRTQIISLGPALLLTLLLISFFTFVRIQDLRQELNHTGQLIANQLAPASEYGVISG 66

Query: 65  SRESV----RRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFL 120
           + E +    R  +S  H      VR + V D+ + +            L+Y +       
Sbjct: 67  NNEVLEGLMRATLSIPH------VRFLEVQDSRNHI------------LVYVEQSD---- 104

Query: 121 SSSVIDENTLILRTPIISERTVLDN-----GDA-NPAT--PVMGYIAIELDLSSLRLQQY 172
            S+   +   + + PI  ++  LDN     G A +PA     +G + + +   +   +Q 
Sbjct: 105 ESANRAQQVEVFQAPIRLQQIRLDNDFLQQGKATSPAIGDDYLGRVIVGMSDDAFSQRQQ 164

Query: 173 QEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELD 232
           + +  AG++ +  +L + + A RL   + +PI+ M + V  I++G  +  +      EL 
Sbjct: 165 EIVIKAGILALFALLFTFLLARRLALSLAKPISDMGHAVKAIQQGEYNTPLPVVDDSELG 224

Query: 233 TLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKS 292
            L + IN +A +L +   E + +I                   EL  A++ A++A R KS
Sbjct: 225 HLARHINNLASALEQASDEQKQAI------------------AELIQAREEAEQANRAKS 266

Query: 293 EFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKL 352
           +FLA MSHELRTP+NGV+G  + +  T L++ QADY     +S  +LL +INDILDFS++
Sbjct: 267 DFLAMMSHELRTPMNGVLGMLQLLETTPLSSEQADYTAVASESTGHLLKVINDILDFSRI 326

Query: 353 EAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPR-GVVGDPLRIQQVL 411
           E   L LE+I F   E++   V     SA ++GL + L++   I +  V GDP RI+Q+L
Sbjct: 327 ERAALQLEHIDFNLGELITNSVQSFQHSAQQRGLGLHLQLPAGIEQLQVNGDPTRIRQIL 386

Query: 412 TNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADA 471
            NL+GN++KFTERG + V    + L   +I L   VRDTGIGI   +   +F AF QAD+
Sbjct: 387 LNLIGNALKFTERGQVQVDARWQVLDRQLIWLTCSVRDTGIGIDSDRLEMMFVAFQQADS 446

Query: 472 SISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRL---HTTELPLNDGYN 528
           SISRRYGGTGLGL I + L   MGG++   SR   GSTF   + L   +   +PL     
Sbjct: 447 SISRRYGGTGLGLSIARTLAERMGGKLRGESREGLGSTFTLEMPLALANPAPVPLTPPTT 506

Query: 529 ADSL--NHRHLLLIEPNMQAAAIVQQTLVQSGLEV 561
             +   ++  +LL+E N    ++V+  L   GL V
Sbjct: 507 VRTTVPDNDQVLLVEDNPVNRSVVEAMLRSLGLAV 541



 Score =  104 bits (259), Expect = 2e-26
 Identities = 50/117 (42%), Positives = 75/117 (64%)

Query: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTA 726
           V+ V+DNP N  ++ A+L+     V +   G EA+E    ++F  +LMD ++PH+DG  A
Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576

Query: 727 CKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSP 783
            + I+QL      P+IA+TA+A+ G+R+R + AGMDDYL+KP+    LQQVL  W P
Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWLP 633