Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  283 bits (723), Expect = 4e-80
 Identities = 203/637 (31%), Positives = 318/637 (49%), Gaps = 56/637 (8%)

Query: 178 AGLVLVIG----ILLSGVFASRLMYDVTRP-ITHMKNMVDRIRRGHLDVRIE---GKMHG 229
           AG+ L+ G    ++L+G+  +     +T+P +T +  +     R     R+E   G  H 
Sbjct: 171 AGITLLNGFARSLVLTGLLLALFYMMLTKPLVTVIGALSGSDPRKPRQTRLECPHGHEHD 230

Query: 230 ELDTLKKGINAMAVS--------------LSEYHVEMQHSIDQATSDLRETLEQLEIQNV 275
           E+  L K  N   VS              L++Y  E++  +   T++L+ +   L + N 
Sbjct: 231 EIGVLVKVANQQFVSMATEIEQRRTAENRLTQYLNELEDIVSARTNELKASNSSLSLSNQ 290

Query: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKS 335
           EL+ A+ RA + A+ ++ FLANMSHE+RTPLNG++G     L   L + Q   L     S
Sbjct: 291 ELEQARSRALDMAQARAAFLANMSHEIRTPLNGMLGMIALALDNPLPSEQRQQLAIAHDS 350

Query: 336 ANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPK 395
              L+ ++NDILD SK +AG+L LE I F+   ++E+  NL + +   + +E+T  I   
Sbjct: 351 GKVLVELLNDILDLSKFDAGQLELERIAFDMGSMVEDTANLLSQNT-AQSVELTCLIASD 409

Query: 396 IPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGIS 455
            P  V+GDP R++Q+++NL+ N++KFT  G +DV      L   V  ++  VRDTGIGI 
Sbjct: 410 FPSSVLGDPTRVRQIVSNLLSNALKFTRFGRVDV-----RLAAIVGGVRLEVRDTGIGIP 464

Query: 456 ERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLR 515
           E  QA++FQ F+QA A I+R+YGGTGLGL +T+ L   M G + + S    GS F     
Sbjct: 465 EDAQARIFQPFTQAGAGITRQYGGTGLGLALTRNLCKAMQGHLHIRSEPGFGSCF----- 519

Query: 516 LHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE-----E 570
             T ELPL            H   I P      +   +   SGL    +  +P      +
Sbjct: 520 --TAELPLT----------VHTEAIPPAPLHGRVAALSAAGSGLNELLQHLLPAWGLTYQ 567

Query: 571 QHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCI 630
           +H     L+           +  L+  R    T  ++V      L   +Q +   P+  +
Sbjct: 568 RHDSCATLVAAVIDLLITDDVEHLFELRPALKTPILLVTAYGNFLP-NEQSLALAPLHQL 626

Query: 631 SKPLSRKKLLQ----TLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQE 686
           ++PL+R  L Q    TL   +P+    ++P    ++    ++ V+DNP N  +   +L +
Sbjct: 627 ARPLARNALYQTLRRTLQGHEPE-HPLAIPAITQEQGRARILLVEDNPVNQLVAKGMLAK 685

Query: 687 RVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTA 746
               V   T G EA+E     +FD++LMD  MP MDG  A + I+Q   + + P++A+TA
Sbjct: 686 LGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGYEASRRIRQSGRWPELPIVALTA 745

Query: 747 HAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSP 783
           +AM  ER+R   AGM+DYL KP     L  ++ HW P
Sbjct: 746 NAMPEERERCRAAGMNDYLAKPFRREELLALVDHWVP 782