Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Sensor histidine kinase RcsC from Pseudomonas sp. DMC3

 Score =  256 bits (655), Expect = 2e-72
 Identities = 202/672 (30%), Positives = 326/672 (48%), Gaps = 78/672 (11%)

Query: 3   QRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALR 62
           +R+ +  R   ++L P L++ LLL + F+F R  DL  ++ ++G  I   LA A+E  + 
Sbjct: 5   RRWDINTRTQLISLGPALLLTLLLISFFTFVRIQDLRQELNHTGQLIANQLAPATEYGVI 64

Query: 63  MQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSS 122
             + E +  ++       +  VR + V D+ + + V          +  P D       S
Sbjct: 65  SGNNEVLESLLKATLATPN--VRFLEVQDSANRILVY---------VEQPAD-------S 106

Query: 123 SVIDENTLILRTPIISERTVLDN--------GDANPATPVMGYIAIELDLSSLRLQQYQE 174
                   + + P+  +R  L N         ++      +G + + L   +   +Q + 
Sbjct: 107 HSRPHQVEVFQAPVRLQRIALHNDFFQDGKVSNSTAGEDYLGRVIVGLSNDAFSQRQQEI 166

Query: 175 IFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTL 234
           +F AG++ +  +L + V A RL   +++PI  + + V  I+ G     +      EL  L
Sbjct: 167 LFKAGILALFALLFTFVVARRLAGSLSQPIRDIGDAVKAIQEGDYKTPLPIVDDTELGAL 226

Query: 235 KKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEF 294
            + IN +A +L +   E Q    QA + L +T E+              A++A   KS+F
Sbjct: 227 SQHINNLAQALEQASREQQ----QAMAQLIQTREE--------------AEKANNAKSDF 268

Query: 295 LANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEA 354
           LA MSHELRTP+NGV+G  + +  T++T  Q +Y     +S  +LL +INDILDFS++E 
Sbjct: 269 LAMMSHELRTPMNGVLGMLQLLETTEMTEEQVEYAALASESTEHLLKVINDILDFSRIER 328

Query: 355 GKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG--VVGDPLRIQQVLT 412
            +L LE+IPF   E++         SA ++GL + L+I P   RG  V GDP RI+Q+L 
Sbjct: 329 SELELEHIPFNLAELIGACAQSFQHSAVQRGLALNLRI-PDDMRGLQVQGDPTRIRQILV 387

Query: 413 NLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADAS 472
           NLVGN++KFTE+G + +  + ++L  +++     VRD+GIGIS      +F AF QAD+S
Sbjct: 388 NLVGNALKFTEQGRVSIEAQWQSLDHELLWFTCSVRDSGIGISSESLELMFNAFQQADSS 447

Query: 473 ISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFW--FTLRLHTTELP-------L 523
           ISRRYGGTGLGL I + L   MGG +   S   +GS F     L L+   +P       L
Sbjct: 448 ISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGRGSVFTLEIPLALYKQAMPALAAPRTL 507

Query: 524 NDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTY-----RSAIPEEQHVYDYVL 578
           N     +    RH+LL+E N     +++  L   G  V+      ++    E   ++ +L
Sbjct: 508 NGSGQGEG---RHVLLVEDNPVNQTVIEAMLRSLGFAVSVATDGAQAVRSAEGGEFEVIL 564

Query: 579 LN----LAPSKETNPTLVELWVQR---ALAMTHNVIVGVPSTELALADQLMQRYPVKCIS 631
           ++    +    E    + +L  +R    +A+T N + G   T LA     M  Y    ++
Sbjct: 565 MDCRLPIIDGYEATRQIRDLPGRRDVPIIALTANALQGDRETCLAAG---MNDY----LA 617

Query: 632 KPLSRKKLLQTL 643
           KP  R  L Q L
Sbjct: 618 KPFKRNDLQQIL 629



 Score =  105 bits (262), Expect = 9e-27
 Identities = 50/115 (43%), Positives = 76/115 (66%)

Query: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTA 726
           V+ V+DNP N  +I A+L+     V   T G +A+  A+  +F++ILMD ++P +DG  A
Sbjct: 518 VLLVEDNPVNQTVIEAMLRSLGFAVSVATDGAQAVRSAEGGEFEVILMDCRLPIIDGYEA 577

Query: 727 CKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
            + I+ L G RD P+IA+TA+A+ G+R+  L AGM+DYL KP + + LQQ+L  W
Sbjct: 578 TRQIRDLPGRRDVPIIALTANALQGDRETCLAAGMNDYLAKPFKRNDLQQILQRW 632