Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  226 bits (575), Expect = 7e-63
 Identities = 114/241 (47%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKS 335
           +L  +K  A+ A + KS FLANMSHE+RTP+NG+IG     L  +L   Q  ++Q+I++S
Sbjct: 451 QLRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAKQRHHIQSIKQS 510

Query: 336 ANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPK 395
           A  LL IINDILD SK EAGK+ ++  PF+   +++E +++ A  A EK L I ++I  +
Sbjct: 511 AQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEKRLPINVRIASE 570

Query: 396 IPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRD-DVIDLQFMVRDTGIGI 454
           +PRGV+GDPLRI+Q+L N + N++KFT  G IDV V++   +      L+F V DTG G+
Sbjct: 571 VPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKLRFAVSDTGCGL 630

Query: 455 SERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514
           +  QQA LFQ+F QA+AS S ++GGTGLGL I ++L   MGG+  + S+   GSTFWFT+
Sbjct: 631 TPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQYGSGSTFWFTV 690

Query: 515 R 515
           +
Sbjct: 691 Q 691



 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 11/155 (7%)

Query: 627 VKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQE 686
           V C SK LS  K+    A Q   +   +            V+  +D+  N  +   LL+ 
Sbjct: 699 VDCPSKFLSPIKIHNNFAHQDHSILQGAQ-----------VLLAEDDLTNQMVAVGLLEA 747

Query: 687 RVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTA 746
               V    +G  A+E+A S +++I+LMD++MP MDG+TA + I++     D P++A+TA
Sbjct: 748 AGMLVDVVGNGAAAVEKAASGKYEIVLMDVRMPGMDGITATRLIRENVELLDLPIVAMTA 807

Query: 747 HAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
           +AM   +D  L AGM D+++KP +   L  V+ +W
Sbjct: 808 NAMNEHKDECLAAGMSDFVSKPFQPEQLYGVIQNW 842