Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 890 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score =  327 bits (838), Expect = 2e-93
 Identities = 232/646 (35%), Positives = 333/646 (51%), Gaps = 52/646 (8%)

Query: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
           A++ A+ A + K+ FLA MSHE+RTP+NGVIG T  +L TQL   Q  +  TI  SA +L
Sbjct: 245 AQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAESL 304

Query: 340 LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
           LT+INDILDFSKLEAGKL LE+  FE   ++E +V++ A  AH KG+EI   +DP +P  
Sbjct: 305 LTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPAW 364

Query: 400 VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
           V GDP R++Q+L NL GN+IKFT  G I + V      D    L+F VRDTGIGI +   
Sbjct: 365 VRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGAGRLRFDVRDTGIGIPQDAI 424

Query: 460 AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519
            +LF  F Q DAS +RRYGGTGLGL I+++L   MGG I + S    GS FWF+L     
Sbjct: 425 GRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLPFQMV 484

Query: 520 ELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLL 579
           E           L  R +L+++ +     ++++ L   G  V   S    E       L 
Sbjct: 485 E---TAPPQRPDLAGRRILVVDDSPINRDVLERQL--RGFGVIVASCADAES-----ALA 534

Query: 580 NLAPSKET-NPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCIS------- 631
            L  +  T  P    +   R   +T + ++G    E  LA   +     + +S       
Sbjct: 535 ELGRAAATGTPWEAAIIDARMPGVTGSDLIGRIRAEPVLAPMGLIIASSQGLSPEDGSPK 594

Query: 632 ------KPLSRKKLLQTLA-----AQQPQLANTSLPKPQADKLP---LCVMAVDDNPANL 677
                 KPL R+ +L  LA        P L ++   +P+A   P   L ++  +DNP N 
Sbjct: 595 ADAFIHKPLRRQTILAVLARVLGLPHDPGLQDSPESEPEAIPRPARRLRILVAEDNPVNQ 654

Query: 678 KLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYR 737
           ++   LL++    V     G EA+E  +SR +D++LMD+QMP MDG+ A  AI+ L G  
Sbjct: 655 QVAVGLLRKLGHSVDVAADGAEAVEAVRSRPYDLVLMDVQMPEMDGLQATAAIRALTGGA 714

Query: 738 D-TPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPP 796
           +  P++A+TA+AM G+    L AGMD Y++KPI+   L +VL  ++            PP
Sbjct: 715 ERVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLMEVLAQYA----------AEPP 764

Query: 797 DGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYL-REVETVVNTAL 855
             AA    A   +P A E  ID    L +    E + + +     D   RE E     A 
Sbjct: 765 --AAKPPQAENPAPSAVE--IDVLDLLCEDLGVETVVEILAKFFEDATSREAECAAALAR 820

Query: 856 EDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASI 901
           ED E     +    H + G+ +  G+  +R+   ++E A+R+GA I
Sbjct: 821 EDHE----RVRREAHAIKGAAASLGLTDIRRTAEAMEAAVRSGAPI 862