Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  255 bits (652), Expect = 9e-72
 Identities = 173/524 (33%), Positives = 274/524 (52%), Gaps = 19/524 (3%)

Query: 277  LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSA 336
            L IAK+ A+ A   KS FLA MSHE+RTP+NGVIG    +  T+L N Q D + T  +S 
Sbjct: 495  LTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDNDQRDLVSTTRESG 554

Query: 337  NNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKI 396
             +LL I++D+LDFSK+EAG+L LE +P     ++E VV   A +A  K L ++  +DP +
Sbjct: 555  LSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFVDPGL 614

Query: 397  PRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVID-LQFMVRDTGIGIS 455
            P  ++ DP+R++Q+L NL GN++KFT +G + + +            L   V DTGIGI 
Sbjct: 615  PPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVADTGIGID 674

Query: 456  ERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLR 515
               + +LFQ F+QA++S +RR+GGTGLGL IT++LV  M G     S    GS+FW  L 
Sbjct: 675  SSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGSSFWCRLP 734

Query: 516  LHTT-----ELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEE 570
            L        E P+ +    D +  R +L+++P+ +   ++     Q G  V       E 
Sbjct: 735  LPVAESVPPETPIGE-QTTDFIGLR-ILIVDPDTEERTLIALATEQGGAAVVRVPGPREA 792

Query: 571  QHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQR-YPVKC 629
            +          AP      T   +  +    M    ++ +   + A   QL +R   +  
Sbjct: 793  EAASRKATATQAPFDLALITADSVAPEDLAPMGTTPLLFIDGQDPAHRFQLERRPNCLGF 852

Query: 630  ISKPLSR-------KKLLQTLAAQQPQLANTSLPKPQADK-LPLCVMAVDDNPANLKLIT 681
            + +PL+R       ++++  +A  +P  A    P+P++       ++  +D+P N ++I 
Sbjct: 853  LGRPLTRAQITAAVERIIGPVAQPRPVCAPLPQPEPRSTAWTGAPILVAEDHPVNQQVIR 912

Query: 682  ALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKG--YRDT 739
              L            G  A+   ++R + +IL D  MP MDG     AI+  +    R T
Sbjct: 913  RQLHLLGFPAEVFPDGAAALAAWRARPYCLILTDCHMPIMDGFQLTAAIRAEEDGTTRHT 972

Query: 740  PVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSP 783
            P++A+TA+A+AGE +R ++AGMD YL+KP+E   L+  + H  P
Sbjct: 973  PILALTANALAGEAERCVQAGMDSYLSKPVELPHLRAAISHLLP 1016