Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  336 bits (861), Expect = 6e-96
 Identities = 232/667 (34%), Positives = 349/667 (52%), Gaps = 41/667 (6%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            A  RA+ A++ K++FLANMSHE+RTP+N +IG +   LKT+L   Q DY++ I++S  +L
Sbjct: 602  ALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHL 661

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL++E        VL+ V NL +     KGLE+   +   +P  
Sbjct: 662  LGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPND 721

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
            +VGDPLR+ Q+L N   N++KFTE G I V+V +     + + L+F VRDTGIG+S  Q 
Sbjct: 722  MVGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQM 781

Query: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519
             +LFQ+F QAD S +R+YGGTGLGL I++KL   M GE+ + S+  +GSTFWFT  L   
Sbjct: 782  GRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKG 841

Query: 520  ELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL---------VQSGLEVTYR-----S 565
              P         L  RH+L+++ N  A A++   L         V+SG     R      
Sbjct: 842  R-PRRALVPKPDLRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAG 900

Query: 566  AIPEEQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRY 625
            A P E    D+ +  +    ET   ++ L +     M      G      A     ++  
Sbjct: 901  AKPFEVVFLDWQMPGM-DGIETARAILGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDV 959

Query: 626  PVKCISKPLSRKKLLQTLAA------QQPQLANTSLPKPQADKLPLCVMAVDDNPANLKL 679
             +K ++  +    +++ L A      ++            A    L V+  +DN  N ++
Sbjct: 960  LIKPVNPSIMFDAVMRALGAALEGDPEEAAAGREVSDDALASLRGLRVLLAEDNDFNQQV 1019

Query: 680  ITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDT 739
             T LL +    V    +G+ A++   +  +D++LMD+QMP MDGV A + I++L G+ D 
Sbjct: 1020 ATELLADGGVEVEVAENGKIAVDMVMAAPYDMVLMDMQMPVMDGVAATREIRRL-GFGDL 1078

Query: 740  PVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGA 799
            PVIA+TA+AM  +RDR   AGM+DYLTKPI+   L   L+ W     +  VA   P    
Sbjct: 1079 PVIAMTANAMQADRDRCAAAGMNDYLTKPIDPDELFACLLKWRGVAPTAVVAPAAP---- 1134

Query: 800  AVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEE 859
               + A+P  P  +  + D+         K D+A+ +  +L  +L +  T V  A  + E
Sbjct: 1135 ---AGAVPLLPEIDPDVFDF--ERMGPIYKWDMAR-LRPILAAFLDDAGTKV--ARLEAE 1186

Query: 860  YPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGAS------IDELEPELFELQD 913
               + L    H L G+ + +G  RL ++ A +E + R+G        I  L P L EL+D
Sbjct: 1187 TDLAALREVAHGLKGTANTAGALRLGRLAADVENSARDGNDAAAGMLIPLLPPTLSELRD 1246

Query: 914  EMAKVLE 920
             +A VL+
Sbjct: 1247 ALAPVLD 1253



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 173 QEIFSAGLVLVIGILLSG-----VFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKM 227
           QE +  G  L + +LL G     +FA  +   + RP T ++++V+++  G LD  +    
Sbjct: 187 QEGYERGQRLTLLLLLGGGGMGLLFAVLIGMSIRRPATRVRDVVEKLVGGQLDQAVPHTD 246

Query: 228 H-GELDTLKKGINAM 241
           +  E+  L + I+ +
Sbjct: 247 YPNEIGALARSIDVL 261