Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  335 bits (859), Expect = 1e-95
 Identities = 233/677 (34%), Positives = 348/677 (51%), Gaps = 60/677 (8%)

Query: 267  LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQA 326
            + Q  +   +L  AK+ A+   R KSEFLA MSHE+RTP+NGVIG T  +L T+L+  Q 
Sbjct: 456  ITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQR 515

Query: 327  DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386
             + +TI  S  +LLT+INDILDFSK+EAGKL L+   FE   ++E VV++ A  AH KG+
Sbjct: 516  HFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGI 575

Query: 387  EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFM 446
            EI   IDP++   V  DP R++QVL NL GN++KFTE+G + + V +    D     +F 
Sbjct: 576  EIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFD 635

Query: 447  VRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQ 506
            VRDTGIGI    Q +LF  FSQ DAS +RRYGGTGLGL I+++L   MGGE+ + S + +
Sbjct: 636  VRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGR 695

Query: 507  GSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV----- 561
            GS FW TL L   EL          L+   +L+++ N     ++++ L   G+EV     
Sbjct: 696  GSRFWITLPL---ELLAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLD 752

Query: 562  --------TYRSAI--PEEQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVP 611
                    T  +A+  P E  V D  +  +  S+          +  A+ M     + V 
Sbjct: 753  AGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVR-------MIHAIPMLAGTRIVVT 805

Query: 612  STELALADQLMQRYPVKC-ISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLP------ 664
            S++   ADQ   +  +   + KPL +  LL T+            P   A++        
Sbjct: 806  SSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEYKASEPAA 865

Query: 665  --LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMD 722
              L ++  +DNP N ++   LL++    V     G EA+E  +   +D++LMD+QMP MD
Sbjct: 866  KRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMD 925

Query: 723  GVTACKAIKQLK-GYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
            G+ A +AI+ L       P++A+TA+AM G+      AGMD Y++KPI+ H L + L  +
Sbjct: 926  GLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985

Query: 782  SPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLV 841
            S               GA     A P + P     +D  V    +A+ E  A  ++ +LV
Sbjct: 986  S---------------GAPETKPAEPPAAPQNSKAVDRDVLDALAADIE--ADTVVEILV 1028

Query: 842  DYLREVETVVNTALEDEEYPASDL---LHHIHKLHGSCSYSGVPRLRKICASLEQALRNG 898
             ++ +  T  N A      P  DL       H + G+ +  G+  +R  C +LEQA R G
Sbjct: 1029 KFMEDARTRQNNAA--ALAPTGDLEKVRREAHTIKGAAASLGLLAVRDACLALEQAARAG 1086

Query: 899  ASIDELEPELFELQDEM 915
                E+ P++  L  ++
Sbjct: 1087 G---EVAPQIDRLHQDI 1100