Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  311 bits (798), Expect = 1e-88
 Identities = 207/543 (38%), Positives = 305/543 (56%), Gaps = 31/543 (5%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            AK  A++AAR KS+FLANMSHE+RTP+N +IG     LKT L   Q DY++ I++S  +L
Sbjct: 709  AKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDPRQKDYVRKIQQSGQHL 768

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL +E       +VLE V NL +  A  KGLE+   +   +P  
Sbjct: 769  LGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLD 828

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVE-MRALRDDVIDLQFMVRDTGIGISERQ 458
            ++GD LR+ QVL N   N++KFTE G I V+V  M  L  DV+ L+F VRDTGIG+++ Q
Sbjct: 829  LMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDVM-LRFEVRDTGIGLTDEQ 887

Query: 459  QAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHT 518
            +A+LFQ+FSQAD S +R++GGTGLGL I++KL   MGG + + S   QGSTFWFT RL  
Sbjct: 888  KARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFTARLGK 947

Query: 519  TELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV-----------TYRSAI 567
             + P         L  R +L+++ N  A A++   L     EV             R A+
Sbjct: 948  GK-PRAPLIPEAELQGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAV 1006

Query: 568  PEEQHVYDYVLLN-LAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELAL-----ADQL 621
             +    YD V L+   P  +      ++   R     H ++V     E  +     AD  
Sbjct: 1007 LDLP--YDVVFLDWQMPDMDGLEVAEQIHSIRLPFPPHLIMVTAYGREEIIKGAQAAD-- 1062

Query: 622  MQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPK----PQADKLPLCVMAVDDNPANL 677
            +    +K +S       +++  A+ Q +     + +      A    L V+ V+DN  N 
Sbjct: 1063 IGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSEGGSVDHAALRGLKVLLVEDNDLNQ 1122

Query: 678  KLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYR 737
            ++   +L++    V    +G  A+E+A++  +D+ILMD+QMP MDGVTA + I++L G+ 
Sbjct: 1123 EVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMPVMDGVTATREIRRL-GHV 1181

Query: 738  DTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPD 797
            D P+IA+TA+AM  +RD+ L+AGM+D++ KPI+   +   +  W      ++    T  D
Sbjct: 1182 DLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISRWCAAEPPRRAG--TASD 1239

Query: 798  GAA 800
            G A
Sbjct: 1240 GCA 1242