Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1196 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  312 bits (800), Expect = 7e-89
 Identities = 233/724 (32%), Positives = 366/724 (50%), Gaps = 65/724 (8%)

Query: 243  VSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHEL 302
            +S +E  ++ + ++  +++D+    E+       L  AKK A+EA++ KS FLA MSHE+
Sbjct: 492  LSAAEIEMDGEPAVIASSTDITRHKEE----EAALAEAKKVAEEASQAKSLFLATMSHEI 547

Query: 303  RTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 362
            RTP+NGV+   + +    L   Q +  + I  SA +LLTIINDILDFSK+EA KL LE +
Sbjct: 548  RTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTIINDILDFSKIEADKLQLELV 607

Query: 363  PFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFT 422
                 EV+E V +L    A EKG+ +   +DP +   VVGDP+R++Q++TNL GN+IKFT
Sbjct: 608  DLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDMVVGDPIRLRQIITNLAGNAIKFT 667

Query: 423  ERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
            ++G + ++V     R+  + L+F + DTGIG+   QQA+LF+ F QAD +ISRRYGGTGL
Sbjct: 668  DKGYVRIAVRALDPRERPLRLEFSITDTGIGLDSEQQARLFEPFMQADITISRRYGGTGL 727

Query: 483  GLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEP 542
            GL I ++LV+ MGGEI + S + QGSTFWF + L   E+      +   +    +L++  
Sbjct: 728  GLSICRRLVAMMGGEIGVRSNVGQGSTFWFQVPLEPAEVEAEPPLDLSGI---AVLVLAE 784

Query: 543  NMQAAAIVQQTLVQSGLEVTYRS----------AIPEEQHVYDYVLLNLAPSKETNPTLV 592
               AA  ++Q L   G +V   +          A       YD  LL+           +
Sbjct: 785  GPVAAECLRQYLGHLGAQVAVVASAEGAVAAVRAAALAGWTYDVALLDGGQDFR-----L 839

Query: 593  ELWVQRALAMTHNVIVGVPSTEL------------ALADQLMQRYPVKCISKPLSRKKLL 640
             L V  AL     +    P  EL            A+A ++        + KP+ R++L 
Sbjct: 840  RLGVAGAL-----MTAAGPDLELKVAMLVAQDAFAAVASEVKAAGLYAVLPKPIRRRQLW 894

Query: 641  QTLA-----------AQQPQLANTSLPKP---QADKLPLCVMAVDDNPANLKLITALLQE 686
            + +A           A     A      P   +A      ++  +DNP N K++   L E
Sbjct: 895  RNVAVAVGRATPEAEAADGTGAEEGWRPPTMEEAAAAGALILVAEDNPTN-KVVIRHLME 953

Query: 687  RVEYVVSCT-SGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK--QLKGYRDTPVIA 743
            R+ Y +    +G EA E+ Q R + ++L D  MP MDG    + I+  +++   D P++A
Sbjct: 954  RLGYAIEVVGNGTEAWERMQIRDYGLLLTDCHMPEMDGYELTQRIREWEVETGHDLPIVA 1013

Query: 744  VTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAV-I 802
            +TA A+AG   R L +GM+ +L KPI+   L   +    P     +  +    +GAA  +
Sbjct: 1014 LTADALAGTARRCLDSGMNAFLAKPIDLVQLDSTIRRLLPTAVGLRRRRSGGGEGAAAPL 1073

Query: 803  SNALPSSPPAEEA---IIDWPVALRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEE 859
              A+P +PP +EA   ++D     +   +  D  +E+L + VD  R +   +  AL+  +
Sbjct: 1074 PAAIPVAPPKDEALLPVLDLTPMRQIFGDIGDEVRELLALFVDTTRPLVVDLGDALQAGD 1133

Query: 860  YPASDLLHHIHKLHGSCSYSGVPRLRKICASLE--QALRNGASIDELEPELFELQDEMAK 917
              A+      H   G+ + +G  R  K+CA  E   A  + A++  L P L    DE A+
Sbjct: 1134 ALAA--REAAHSAKGAGNSAGAFRFAKLCAEAEAASAASDLATVLALYPALEGAFDEAAQ 1191

Query: 918  VLEA 921
             + A
Sbjct: 1192 AIAA 1195