Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  342 bits (878), Expect = 9e-98
 Identities = 229/675 (33%), Positives = 348/675 (51%), Gaps = 40/675 (5%)

Query: 271  EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQ 330
            ++    L  AK+ A++A R+KS+FLANMSHE+RTP+N +IG +   LKT+LT  Q DY++
Sbjct: 866  KLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVK 925

Query: 331  TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390
             I+ +  +LL IINDILDFSK+EAGKLA+E+  FE  +VL+ + NL       K LE+  
Sbjct: 926  KIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVF 985

Query: 391  KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450
             I  ++PR +VGD LR+ Q+L N   N++KFTE G ID+   ++   +  + L F VRDT
Sbjct: 986  DIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDT 1045

Query: 451  GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510
            GIGI+  Q A+LFQ+F QAD S +R++GGTGLGL I+++L   MGGE+ + S   +GSTF
Sbjct: 1046 GIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTF 1105

Query: 511  WFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRS----A 566
            WFT R+    +       +  L  R +L+++ N  A  ++   +     +VT R+    A
Sbjct: 1106 WFTARMGIGTVRKRRLLPSPDLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEA 1165

Query: 567  IPEEQHV------YDYVLLNL----APSKETNPTLVELWVQRALAMTHNVIVGVPS---- 612
            + E +        Y+ VLL+         ET   L+ L +  A  +      G       
Sbjct: 1166 VDEVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNL 1225

Query: 613  -TELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPLCVMAVD 671
             TE  + D L++      +   + R    Q    +     ++S            ++ V+
Sbjct: 1226 ITEAGIEDVLIKPVSASILFDTIMRLFGCQPAEPRDVDGGHSSSEMHLETIRGARILLVE 1285

Query: 672  DNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK 731
            DN  N ++ T LL +    V     G  A+ + +   +D++LMD+QMP MDGV A + I+
Sbjct: 1286 DNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVAATREIR 1345

Query: 732  QLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVA 791
            +L  +   P++A+TA+AM  +RDR L AGM+D++TKPI+   L   L+ W     S    
Sbjct: 1346 RLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWIAPRHSP--- 1402

Query: 792  KVTPPDGAAVISNALPSSPPAEEAI-----IDWPVALRQSANKEDLAKEMLGMLVDYLRE 846
                   AA    + PS    E +I     +D    LR+   K  L    L       + 
Sbjct: 1403 -------AAAHGASAPSETGEEHSIPRIDGLDTTTGLRRVQGKTRLYLTSLRKFAAGRKS 1455

Query: 847  VETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASIDELEP 906
            V   +  ALE +++  ++ L H  K  G     G   +++  A LE AL +  S  E+E 
Sbjct: 1456 VAGDIRAALEADDWSTAERLAHTTK--GLAGMIGADEVQRRAADLEAALCDKLSRQEVE- 1512

Query: 907  ELFELQDEMAKVLEA 921
               +L D MA  L A
Sbjct: 1513 ---DLLDAMAAPLAA 1524