Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 918 a.a., BarA sensory histidine kinase (= VarS = GacS) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  891 bits (2303), Expect = 0.0
 Identities = 490/935 (52%), Positives = 648/935 (69%), Gaps = 34/935 (3%)

Query: 5   YGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRMQ 64
           Y LRAR+M L LAPT++IGLLLS  F  +RY+DL+ Q+ ++GASIIEPLA++SE  + +Q
Sbjct: 4   YSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQ 63

Query: 65  SRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSSSV 124
           +RES+ ++IS  HR++S +VR+I+V+D ++ LFVTSNFH +  ++  P   P P   S  
Sbjct: 64  NRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVD 123

Query: 125 IDENTLILRTPIISERTVLDNG---DANPATPVMGYIAIELDLSSLRLQQYQEIFSAGLV 181
              + +ILRTPIISE    D     DA     ++GY+A+ELDL S+RLQQY+EIF + ++
Sbjct: 124 RHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVM 183

Query: 182 LVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAM 241
           ++  I ++ +F  RLM DVT PI +M N VDRIRRG LD R+EG M GELD LK GIN+M
Sbjct: 184 MLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSM 243

Query: 242 AVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHE 301
           A+SL+ YH EMQH+IDQATSDLRETLEQ+EIQNVELD+AKKRAQEAAR+KSEFLANMSHE
Sbjct: 244 AMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHE 303

Query: 302 LRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALEN 361
           LRTPLNGVIGFTR  LKT+L  +Q D+L TIE+SANNLL IIND+LDFSKLEAGKL LE+
Sbjct: 304 LRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 362 IPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKF 421
           IPF  +  L+EVV L A S+H+KGLE+TL I   +P  V+GDPLR+QQV+TNLVGN+IKF
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 422 TERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 481
           TE GNID+ VE RAL +  + ++  +RDTGIGI ER Q++LFQAF QADASISRR+GGTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 482 LGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIE 541
           LGLVITQKLV+ MGG+IS  S+ ++GSTFWF + L      + DG +   L  + L  +E
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVE 543

Query: 542 PNMQAAAIVQQTLVQSGLEVTYR---SAIPEEQHVYDYVLLNLAPSKETNPTLVELWVQR 598
           PN  AA      L  + +EV Y    SA+P     YD ++L++  +     T+    + +
Sbjct: 544 PNATAAQCTLDLLSDTPVEVVYSPTFSALPLAH--YDIMILSVPVTFREPLTMQHERLAK 601

Query: 599 ALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAA-------QQPQLA 651
           A +MT  +++ +P      A++L Q     C+ KPL+  +LL  L          +P L 
Sbjct: 602 AASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLM 661

Query: 652 NTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDI 711
           +TS       K+ + VMAVDDNPANLKLI ALL+++V++V  C SG +A+++A+  QFD+
Sbjct: 662 DTS-------KITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDL 714

Query: 712 ILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEE 771
           ILMDIQMP MDG+ AC+ I QL   + TPVIAVTAHAMAG++++LL AGM+DYL KPIEE
Sbjct: 715 ILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEE 774

Query: 772 HILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKED 831
             L  +L+ + P   +   A++  P+ A  I N          A +DW +ALRQ+A K D
Sbjct: 775 EKLHNLLLRYKP--GANVAARLMAPEPAEFIFN--------PNATLDWQLALRQAAGKPD 824

Query: 832 LAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASL 891
           LA++ML ML+D+L EV   +   L  E    + L+  +HKLHGSC YSGVPR++ +C  +
Sbjct: 825 LARDMLQMLIDFLPEVRNKIEEQLVGEN--PNGLVDLVHKLHGSCGYSGVPRMKNLCQLI 882

Query: 892 EQALRNGASIDELEPELFELQDEMAKVLEASRDYL 926
           EQ LR+G   +ELEPE  EL DEM  V   ++  L
Sbjct: 883 EQQLRSGVHEEELEPEFLELLDEMDNVAREAKKIL 917