Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  292 bits (747), Expect = 1e-82
 Identities = 217/693 (31%), Positives = 364/693 (52%), Gaps = 69/693 (9%)

Query: 260  TSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319
            T D+ E+  Q E    EL  AK  A++A++ KSEFLANMSHE+RTPLNGVIGFT  +LKT
Sbjct: 665  TQDITESCLQRE----ELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT 720

Query: 320  QLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQAT 379
             L+ +QA YL  + +S N LL IINDILDFSK+EAGKL L+    +  E+ E+  ++   
Sbjct: 721  DLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITY 780

Query: 380  SAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSV----EMRA 435
              H+KGLE+ L I P IPR +  D +R++Q++ NL+GN+ KFTE G I++ +    +  A
Sbjct: 781  EVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEA 840

Query: 436  LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495
             R+ VI  +F VRDTGIGI   +Q ++F+AFSQ D S +++YGGTGLGL I+ +L+  M 
Sbjct: 841  SREMVI--RFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMH 898

Query: 496  GEISLTSRLHQGSTFWFTLRL---HTTELPLNDGYNADSL-----NHRHLLLIEPNMQAA 547
              + L S + +GSTF+F L +   +   + L +  + +++     N  + ++IE  M A 
Sbjct: 899  SGLQLHSTVGKGSTFYFDLNVKYEYGERITLEEDLSVENVLIVDDNDNNRMIIE-RMMAL 957

Query: 548  AIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNL----APSKETNPTLVELWVQRALAMT 603
              +  +  ++G E   +    E+   +D VL++         ET   + E+  ++ +   
Sbjct: 958  RGISTSQAKNGFEAIQKFVEGEK---FDVVLMDYHMPYMNGIETIRKIREIVDRQPIIFL 1014

Query: 604  HNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAA-------QQPQLANTSLP 656
            H+      S +  +     +    K + KP+  +++   L +       ++    N  LP
Sbjct: 1015 HS-----SSDDDKILKACKELGVRKKLVKPIKLQEMYDALLSINKKQDYRKATDQNIDLP 1069

Query: 657  K---PQADKLPLCVMAVDDNPANLKLITALLQER--VEYVVSCTSGQEAIEQAQSRQFDI 711
            K   P   K    V+ V+DN  N+ L   ++        ++   +G+EA+E  +     +
Sbjct: 1070 KNLFPNDGK----VLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSV 1125

Query: 712  ILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEE 771
            I MD+QMP M+G  A +AI++     +  +IA+TA  + GER++ ++AGM+D++ KP  E
Sbjct: 1126 IFMDVQMPEMNGYEATQAIRKKYNKHNILIIALTAGNIKGEREKCMQAGMNDFIAKPFVE 1185

Query: 772  HILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAE----EAIIDWPVALRQSA 827
              + +++  W  +     + K+  P      S+  PS    +    +A++ +P       
Sbjct: 1186 EDVIKLMEKWHFNDLDSDL-KIHAP------SSESPSKRLFDIDKFQAVLGFP------- 1231

Query: 828  NKEDLAKEMLGMLVDYLR-EVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRK 886
               DL  EM  +++   + E+E    T LE  +     +    HKL+ + S   + +L  
Sbjct: 1232 ---DLESEMFQIILKSGKSELEKSEATFLEILQNQDEGISQAAHKLYSTASAMYLSKLST 1288

Query: 887  ICASLEQALRNGASIDELEPELFELQDEMAKVL 919
            +   +E    +  +   L  E+ ++ +E+ K L
Sbjct: 1289 LATKMETRKFHDFNDPGLAEEIKQILEEIKKAL 1321