Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  311 bits (796), Expect = 2e-88
 Identities = 216/681 (31%), Positives = 367/681 (53%), Gaps = 52/681 (7%)

Query: 263  LRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLT 322
            L E + +   Q  +L  + + A++A R KSEFLANMSHE+RTPLNG+IGF+  +LKT+L 
Sbjct: 509  LTEDITEAYFQKNDLQQSMRHAEQANRAKSEFLANMSHEIRTPLNGIIGFSDLVLKTELN 568

Query: 323  NSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAH 382
            + Q  YL  + +SAN+LL IINDILDFSK+EAGKL L+   ++  E++E+  ++     H
Sbjct: 569  DRQEQYLSIVNQSANSLLNIINDILDFSKIEAGKLDLDIERYDLYELVEQASDIITYVIH 628

Query: 383  EKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVE--MRALRDDV 440
            +KGLE+ L I P IPR    D +R++QVL NL+GN+ KFT++G I++ +     + ++  
Sbjct: 629  QKGLEMLLNISPNIPRFAWIDSVRLKQVLVNLLGNASKFTDKGEIELKLTPLSNSNKNGE 688

Query: 441  IDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISL 500
            +D++F VRDTGIGI   +Q ++F+AFSQ D S +++YGGTGLGL I+ +L+  MG ++ L
Sbjct: 689  MDIRFSVRDTGIGIKSEKQDKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMGSKLQL 748

Query: 501  TSRLHQGSTFWFTLRLHTTE---LPLNDGYNADSL-----NHRHLLLIEPNMQAAAIVQQ 552
            TS  ++GSTF+F LR+   +   +PL    N   +     N  + ++IE  M A   +Q 
Sbjct: 749  TSTPNRGSTFYFDLRIKCEDGQAIPLEGEPNLHKILIVDDNANNRMIIE-RMLALKGIQT 807

Query: 553  TLVQSGLEVTYRSAIPEEQHVYDYVLLN--------LAPSKETNPTLVELWVQRALAMTH 604
               ++G E   R    EE   YD +L++        +  +++      E  +    + + 
Sbjct: 808  VQAKNGYEAIQRLVDGEE---YDVILMDFQMPYLNGIDTARKIRANFKEQPIIFLHSSSE 864

Query: 605  NVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLP 664
            +  + + S EL++  +L++   ++ +   L + K       ++P+      P    +K  
Sbjct: 865  DKTISLASKELSIPHRLIKPIKMQDMYDALLKIK-HNNRKGKEPKEKRLYAPPLLTEK-- 921

Query: 665  LCVMAVDDNPANLKLITALLQ--ERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMD 722
              ++ V+DN  N+ L   ++        V+  ++G++A+E  +    D+I MD+QMP M+
Sbjct: 922  SSILFVEDNAINMLLGKTVIHNISPKTTVLEASNGKQALELLKVNLPDMIFMDVQMPEMN 981

Query: 723  GVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWS 782
            G  A K I++    ++  + A+TA  + GE+++ ++AGMDD++ KP  E  L ++L  WS
Sbjct: 982  GYEATKIIRKEYKNKNLLIFALTAGNLKGEKEKCMEAGMDDFIAKPFVEEDLIRLLEKWS 1041

Query: 783  PHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVD 842
                  + A   P +      N  P +    + ++D+          +DL   +   L++
Sbjct: 1042 KSIDKHKNAPSIPSE------NLNPFNIRKLQLVMDF----------KDLEDPIFKQLIN 1085

Query: 843  YLREVETVVNTALEDEEYPA---SDLLHHIHKLHGSCSYSGVPRLRKICASLEQA---LR 896
              ++  T    +L  E  PA    DL    HKL+ S +   + +L  + + LE A   + 
Sbjct: 1086 ISKKELTKTKDSL--ELLPAIDNPDLSKIAHKLYSSATSLCMEKLASLASKLENASLSME 1143

Query: 897  NGASIDELEPE-LFELQDEMA 916
              + I  L  E L E+ + +A
Sbjct: 1144 KHSLISSLTDEILLEITERLA 1164