Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 949 a.a., hybrid sensory kinase in two-component regulatory system with RcsB and YojN from Escherichia coli BL21

 Score =  237 bits (605), Expect = 2e-66
 Identities = 167/508 (32%), Positives = 263/508 (51%), Gaps = 25/508 (4%)

Query: 284 AQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQT-IEKSANNLLTI 342
           A++A++ KS FLA +SHELRTPL G+IG    +L+T+      D L T +  S++ LL I
Sbjct: 463 AEQASQSKSMFLATVSHELRTPLYGIIG-NLDLLQTKELPKGVDRLVTAMNNSSSLLLKI 521

Query: 343 INDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVG 402
           I+DILDFSK+E+ +L +E   F  +EV+  +          K L +   I+P +P  + G
Sbjct: 522 ISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNG 581

Query: 403 DPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQL 462
           DP+R+QQV++NL+ N+IKFT+ G I + V     R D   L   VRDTG+GI  ++  +L
Sbjct: 582 DPMRLQQVISNLLSNAIKFTDTGCIVLHV-----RADGDYLSIRVRDTGVGIPAKEVVRL 636

Query: 463 FQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 522
           F  F Q    + R + GTGLGL I +KL+S M G+IS+ S    GS F   + L+  + P
Sbjct: 637 FDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYP 696

Query: 523 LNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV-TYRSAIPEEQHVYDYVLLNL 581
              G   + L+ +   L   N      ++ +L +SG+ V TY    P  + V        
Sbjct: 697 QKKG--VEGLSGKRCWLSVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVL------- 747

Query: 582 APSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQ 641
                T+  + + W  RA+       +G+P  E A  + +        +   L+R  L++
Sbjct: 748 ----ITDEVVSKKWQGRAVVTFCRRHIGIP-LEKAPGEWVHSVAAPHELPALLARIYLIE 802

Query: 642 TLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAI 701
            + +  P  A  S  K  +D   + ++ VDD+P N +L+   L        +   G +A+
Sbjct: 803 -MESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDAL 861

Query: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGM 761
                   DI+L D+ MP+MDG    + I+QL      PVI VTA+A+A E+ R L++GM
Sbjct: 862 NVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGM 919

Query: 762 DDYLTKPIEEHILQQVLVHWSPHTRSKQ 789
           D  L+KP+   +++Q L  ++   R  +
Sbjct: 920 DSCLSKPVTLDVIKQTLTLYAERVRKSR 947