Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rhodanobacter sp000427505 FW510-R12

 Score =  303 bits (776), Expect = 7e-87
 Identities = 172/431 (39%), Positives = 247/431 (57%), Gaps = 19/431 (4%)

Query: 22  IERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPF 81
           I  L H G G+A +  K +FV GAL GE+V  +L +    +   ++++VL  S  RV P 
Sbjct: 16  ITALAHDGRGVARIDGKTVFVSGALLGEQVTAKLRKRHRHFDEAEVVEVLVASPHRVEPR 75

Query: 82  CAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLAL-SAPVCSDDQGYRRRARL 140
           C H+A+C GC LQHLD A QI  KQ+ L++   +    + A    P+ ++  GYRR+ RL
Sbjct: 76  CRHFAECSGCSLQHLDAAAQIEAKQRVLAENFERIGKVAPASWLPPLTAEPWGYRRKGRL 135

Query: 141 SLMWDKKTQQLQLGFRRKQS-KAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHV 199
           S+    K  ++ +GFR +Q+ + +  +  C V+ P+L   +  L  LL        +  +
Sbjct: 136 SVRNVAKKGRVLVGFREEQNPRFVTEIQQCEVMHPALGPKVGLLAELLGTMDAVNDVPQI 195

Query: 200 ELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQH----------- 248
           E   GD+   LV RH+  L E D   LT F  Q+   +YL        H           
Sbjct: 196 EFAAGDDLMALVFRHMQPLSEHDLAALTAFGQQHGFAIYLQPGGTSSVHPLWPEHPRLAF 255

Query: 249 --VQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGN 306
               G+A Y +     L F P  F+QVN  +NQ M+ +A+  L+  P +RVLDLFCGLGN
Sbjct: 256 RIASGDARYADV---ELEFQPLDFVQVNAGMNQLMMARAMELLDPQPTDRVLDLFCGLGN 312

Query: 307 FTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK 366
           FTLP+A++   VVGVEG   +V+ A  NA  N I N  F+ ANL +D  +A WA+Q + K
Sbjct: 313 FTLPIARRVAEVVGVEGEHGLVERAAQNAARNGIANACFHVANLFEDQRAADWAKQPWDK 372

Query: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQ-GFRLEKLGMLDMFP 425
           +LLDP RAGA+ ++D L     +R+VY+SC+PA+LARD+  L+ + GFRL   G++DMFP
Sbjct: 373 LLLDPPRAGADKLLDYLPHKQTRRIVYISCHPASLARDAGILVERHGFRLAAAGVMDMFP 432

Query: 426 HTSHLESMALF 436
           HTSH+ES+ALF
Sbjct: 433 HTSHVESIALF 443