Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

 Score =  142 bits (358), Expect = 2e-38
 Identities = 124/422 (29%), Positives = 199/422 (47%), Gaps = 30/422 (7%)

Query: 22  IERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPF 81
           IER+  QG G+      PLF    L GE     L   + +  R +L  +++ S ERV P 
Sbjct: 6   IERMGAQGDGIVRGPSGPLFAPLTLAGE-----LVRGEVEGERIRLDAIIELSPERVEPE 60

Query: 82  CAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLS 141
           C H+ +CGGC LQH + A  +  K+Q +   + +  G    ++  + +   G RR    +
Sbjct: 61  CPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSR-EGIEADVAPTIDAHGAGRRRVIFHA 119

Query: 142 LMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVEL 201
             +  +T    +GF  ++S A+V +  CPVL P L+  LP   A+    +  ++   ++L
Sbjct: 120 RQYGARTV---VGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQL 176

Query: 202 VKGDNTRVLVLRHLGALIEQDQQRLTDFAS-QNQLTLYLMLEAGELQHVQGEAPYCEETG 260
           +  D    + +R  G L       LTD A   ++  L  +   GEL  +Q E P      
Sbjct: 177 IATDTGLDMDVRGSGPL---PPALLTDLAVIADRFRLARLTRHGELV-IQREPPRLAMGR 232

Query: 261 SRLSFLPSHFIQVN----RAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQ 316
           +R+   P+ F+Q      R +  H+    +         +V DLF G+G F L LA+ A+
Sbjct: 233 ARVDLPPAAFLQATAEGERVLADHVAAGMVG------ARKVADLFAGVGTFALRLAETAR 286

Query: 317 --AVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARA 374
             A     G    +  A H   L  ++  A  +    + + +A  A   F  V++DP R 
Sbjct: 287 VFAAENHAGALAALLKAGHTPGLKGVDGEA--RDLFRRPLMAAELAA--FDAVVIDPPRQ 342

Query: 375 GAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMA 434
           GAE    +L+     R+VYVSCN AT ARD+  L++ G RLE +  +D F +++H+E +A
Sbjct: 343 GAEAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVA 402

Query: 435 LF 436
            F
Sbjct: 403 TF 404