Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 94/365 (25%), Positives = 153/365 (41%), Gaps = 42/365 (11%)

Query: 101 QIHHKQQALSQLMVKF-AGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQ 159
           Q+  K   L  L+  F A +     +P+    Q +R RA   L W +  ++    F +  
Sbjct: 11  QLQDKVTRLRDLLAPFDAPEPQVFDSPL----QNFRLRAEFRL-WREGGERHYAMFSQDD 65

Query: 160 SKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGH-------VELVKGDNTRVLVL 212
            +  + +   P+    +N L+P L A    W     L H       +  + GD   ++ L
Sbjct: 66  KRTPILIEAFPIASTRINQLMPQLKAA---WQASAALSHKLFQVEFLTTLAGD--AMITL 120

Query: 213 RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET---GSRLSFLPSH 269
            +   L E         A+   L + ++  +   + V G     E+    G   S+    
Sbjct: 121 CYHRPLDEHWHTAARQLAAD--LNVSIIGRSKGKRDVIGHDYVVEKLDVGGRTFSYRQPE 178

Query: 270 --FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEM 327
             F Q N  VNQ M+  A   L   P + +L+L+CG GNFTLPLA + + V+  E     
Sbjct: 179 GAFTQPNGTVNQKMLNWAYEALGDRPDD-LLELYCGNGNFTLPLATRVRKVLATEISKTS 237

Query: 328 VQHATHNAKLNQINNVAFYQANLEQDMTSA-------------SWAQQKFAKVLLDPARA 374
           V  A  N   N ++NV   + + E ++T A                  +F  V +DP RA
Sbjct: 238 VNAALSNLDENAVDNVTLVRLSAE-ELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296

Query: 375 GAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMA 434
           G +    +L+      ++Y+SCNP TLA +  + L    ++ +  M D FP T H+ES  
Sbjct: 297 GMDPDTCELTR-RFDNILYISCNPETLAANI-AQLHDTHKITQCAMFDQFPWTHHMESGV 354

Query: 435 LFVKK 439
           L  ++
Sbjct: 355 LLTRR 359