Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  359 bits (921), Expect = e-103
 Identities = 195/425 (45%), Positives = 271/425 (63%), Gaps = 6/425 (1%)

Query: 16  KHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSA 75
           K Q +TIERL + G G+ F   +  FV+GAL GEEV  ++     K    +  +V   S 
Sbjct: 25  KKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEEVEARVLGTHGKIVEARTERVFSASE 84

Query: 76  ERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQGY 134
            R    CAH+ +CGGC +QHL    Q+  KQ+ L++ + + AG +    +AP+   + GY
Sbjct: 85  LRRPAPCAHFGRCGGCSVQHLPHGEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGAEFGY 144

Query: 135 RRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPE 194
           RRRAR+++ WD + +QL++GFR   S+ IV +  CPVL  +L  ++  L  +L   S+P+
Sbjct: 145 RRRARVAVRWDARAKQLEVGFRAVASQDIVAIDECPVLVQALQPIMQRLPNMLRRLSKPQ 204

Query: 195 RLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAP 254
            LGHVEL  G +  VL LRH+  L E D Q L +F + ++  L+L  E G+ + V+ ++ 
Sbjct: 205 ALGHVELFSGTSVAVL-LRHIAPLSEADLQVLKEFCAFHEAQLWLHGE-GQPEPVEADSV 262

Query: 255 Y---CEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPL 311
                      L++ P  F+QVN  VN+ MV QAL WL   P ERVLDLFCGLGNF LPL
Sbjct: 263 LGFRLSHWDLELAYRPGDFVQVNAGVNEAMVAQALEWLAPQPDERVLDLFCGLGNFALPL 322

Query: 312 AKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDP 371
           A+Q + VV VEGV  MV+ A  NA  N ++NV F+QA+L Q +T A WA+Q F+ VLLDP
Sbjct: 323 ARQVREVVAVEGVQTMVERAAVNAVSNDLHNVQFFQADLSQPLTDAEWAKQGFSAVLLDP 382

Query: 372 ARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLE 431
            R GA  +V +L+ LGAKR+VYVSCNPATLARD+  L+ QG+RL++ G+LDMFP T+H+E
Sbjct: 383 PRDGALEVVRKLATLGAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 432 SMALF 436
           +MALF
Sbjct: 443 AMALF 447