Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

 Score =  239 bits (609), Expect = 2e-67
 Identities = 166/458 (36%), Positives = 245/458 (53%), Gaps = 46/458 (10%)

Query: 22  IERLDHQGSGLAFLHKKP---LFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERV 78
           +E LD    G++  HK     +F++GALP EEV   +   K+ + +G +  + + S++RV
Sbjct: 21  VESLDLDAQGVS--HKADGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRV 78

Query: 79  APFCAHYA----QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQG 133
            P C H+      CGGC +QHLD A Q+  KQ+AL   +      +   L  P+      
Sbjct: 79  RPGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHLGKVKPENLLRPLEGPAWH 138

Query: 134 YRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP 193
           YR RARLS+    K   + +GF  ++S+ + ++  CPVL   ++ +L  L AL+      
Sbjct: 139 YRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSEMLMPLRALIGSLDAR 198

Query: 194 ERLGHVELVKGD-------NTRVLVLRHLGALIEQDQQRLTDFASQNQ-LTLYLMLEAGE 245
           +    +EL  GD        T  LVLRHL  L   D  RL  FA++N+ +  +L  +  +
Sbjct: 199 DTCPQIELACGDAPDSTKLGTIALVLRHLEPLSRADIDRLKAFAAENEGVQWWLQAKGPD 258

Query: 246 LQHV--QGEAPYC---EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
              +  +G +P      E G  + F P+ F QVN  +N+ +V +AL  L+V P ERV+D 
Sbjct: 259 TVKLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQPDERVIDW 318

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQ--------INNVAFYQANLEQ 352
           FCGLGNFTLPLA QA+ V+G+EG D +V  AT N   NQ        ++   F   NL  
Sbjct: 319 FCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGTNQPATSARRELSPAKFVARNL-F 377

Query: 353 DMTSASWAQQKFA-KVLLDPARAGAEGIVDQLSAL------------GAKRVVYVSCNPA 399
           +MT A   +   A K L+DP R GA  +   ++ L              KR+VYVSCNP+
Sbjct: 378 EMTPAMLVEDGSADKWLVDPPREGAFALAKAMADLHQQPELCTDGWTPPKRIVYVSCNPS 437

Query: 400 TLARDSQSLLSQ-GFRLEKLGMLDMFPHTSHLESMALF 436
           TLARD+  L+ Q G+R    G+++MFPHT+H+ES+A+F
Sbjct: 438 TLARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVF 475