Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

 Score =  111 bits (278), Expect = 3e-29
 Identities = 98/379 (25%), Positives = 176/379 (46%), Gaps = 39/379 (10%)

Query: 87  QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDK 146
           +C  C L     + Q+ +K Q L +L+       +    PV S D  +R +A++ ++   
Sbjct: 10  RCTSCHLCAQPYSEQVTNKDQQLRELIAP--ATDVQWLPPVTSADTAFRNKAKMVVLGAA 67

Query: 147 KTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLN-----ALLSEWSQPERLGHVE- 200
               L  G    Q + +  VT CP+    +  LL  L      A +  +++ ++ G ++ 
Sbjct: 68  HAPIL--GIEDAQGQPLSLVT-CPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKF 124

Query: 201 --LVKGDNTRVLVLRHLG---ALIEQDQQRLTDFASQNQL--TLYLMLEAGELQHVQGEA 253
             L + +N+   +LR +    A++E+ ++ L    +   +   + + ++   +  ++GE 
Sbjct: 125 ILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEE 184

Query: 254 P-YCEETGSRLSFL--------PSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGL 304
             +  ET S L           P  F Q N  V + +   A  W+      ++ DLFCG+
Sbjct: 185 EIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGV 244

Query: 305 GNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKF 364
           G F L  A    AV G+E   E +  A  +A++  I+N++F        + SA ++Q + 
Sbjct: 245 GGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSF------AALDSAKFSQSQM 298

Query: 365 AK---VLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM 420
           +    VL++P R G    +  QL AL  K ++Y SCNP T+ +D   L S  +++ ++  
Sbjct: 299 SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS--YQMIRVQW 356

Query: 421 LDMFPHTSHLESMALFVKK 439
            DMFPHT H E + L V+K
Sbjct: 357 FDMFPHTDHAEVLTLLVRK 375