Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

 Score = 80.9 bits (198), Expect = 6e-20
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 21/186 (11%)

Query: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
           F Q N  V + M+  A++  + S  + +L+L+CG GNF+L LA+  + V+  E     V+
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGD-LLELYCGNGNFSLALAQNFERVLATELAKPSVE 246

Query: 330 HATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK---------------VLLDPARA 374
            A  N   NQI NV   + + E + T A   +++F +               + +DP R+
Sbjct: 247 AAQFNIAANQIGNVQIIRMSAE-EFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRS 305

Query: 375 GAEGIVDQLSAL-GAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESM 433
           G +  +D    + G +R++Y+SCNP TL  + Q +L +  ++ +  + D FP+T H+E+ 
Sbjct: 306 GMD--IDTCKMVQGYERILYISCNPETLQENLQ-VLGETHQVVRFALFDQFPYTHHMEAG 362

Query: 434 ALFVKK 439
            +  +K
Sbjct: 363 VMLERK 368