Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

 Score =  120 bits (301), Expect = 8e-32
 Identities = 96/357 (26%), Positives = 162/357 (45%), Gaps = 11/357 (3%)

Query: 82  CAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLS 141
           C H+  CGGC+LQ +D           ++  +   AGQ++     + +     R R R S
Sbjct: 51  CVHFPGCGGCELQQIDEPSLADFVSARVTGAL---AGQAVVPQTVLPAHVSPPRTRRRAS 107

Query: 142 LMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVEL 201
           L   ++ +++ +GF  + S  +V++T C +L+P L AL+  L  +L      +R  HV +
Sbjct: 108 LRAARQGKRITIGFAEQGSHVLVDLTMCEILDPRLFALIAPLRTMLLTCLPDKRAAHVRM 167

Query: 202 VKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET-- 259
              D    L+L  +        + L DFA  + L   L ++ G+    + E      +  
Sbjct: 168 SLTDQGVDLLLEGVKVEGLAADEALGDFARGHALAR-LTIDQGDGPETRWEPEPATVSFG 226

Query: 260 GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVV 319
           G  + F P  F+Q        +V    + L  +    V DLFCGLG F L +    + V 
Sbjct: 227 GVAVGFPPYSFLQATPDGEAALVKAVQDALPATGA--VADLFCGLGTFALAIGAN-RPVY 283

Query: 320 GVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAGAEGI 379
             EG  ++V          Q   VA ++    + +T       +FA V++DP RAGA   
Sbjct: 284 AAEGARDLVLSLKLAGHRAQRRMVADHRDLFRRPLTPEEL--NRFAAVVIDPPRAGAREQ 341

Query: 380 VDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALF 436
             QL+      + YVSCNP + ARD+  L++ G+ L+ +  +  F  ++H+E + +F
Sbjct: 342 AMQLAQSTVPLIAYVSCNPGSFARDAAHLVTGGYVLDSVMPVGQFRWSTHVELVGIF 398