Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 102/376 (27%), Positives = 155/376 (41%), Gaps = 60/376 (15%)

Query: 99  AGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRK 158
           A Q+  K   L +L+  F     A+     S  + YR RA   L W +  Q+    F   
Sbjct: 11  ATQLDAKVARLRELLAPFGAPEPAVFD---SPREHYRLRAEFRL-WREDGQRHYAMFAPG 66

Query: 159 QSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGAL 218
           +    + +   P+    +NAL+P L A    W   E LG+    +      L      A+
Sbjct: 67  EKHKAILIDDFPIASERINALMPRLKAA---WQASEELGN----RLFQVEFLTTLAGDAM 119

Query: 219 IEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLSFLPSH--------- 269
           I     R  D A +        +EA +L    G +      G RL     +         
Sbjct: 120 ITMCYHRPLDEAWE--------VEARQLAEALGVSVIGRSKGKRLVIGRDYAVEKLDVAG 171

Query: 270 -----------FIQVNRAVNQHMVVQALNWLEVSPQER---VLDLFCGLGNFTLPLAKQA 315
                      F Q N AVNQ M    L+W   +  ER   +L+L+CG GNFTLPLA + 
Sbjct: 172 RVFSYRQPEGAFTQPNGAVNQKM----LSWAFEAIGEREDDLLELYCGNGNFTLPLATRV 227

Query: 316 QAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQK 363
           + V+  E     V  A  N   N ++NV   + + E+             +        +
Sbjct: 228 RQVLATEISKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQ 287

Query: 364 FAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDM 423
           F  V +DP RAG +    +L+    +R++Y+SCNP TLA +  + L    R+E+  + D 
Sbjct: 288 FGTVFVDPPRAGMDPDTCELTR-RFERILYISCNPETLAANI-AQLQDTHRIERCALFDQ 345

Query: 424 FPHTSHLESMALFVKK 439
           FP+T H+ES  L V++
Sbjct: 346 FPYTHHMESGVLLVRR 361