Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  345 bits (884), Expect = 2e-99
 Identities = 194/425 (45%), Positives = 263/425 (61%), Gaps = 6/425 (1%)

Query: 16  KHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSA 75
           K Q + IERL   G G+AFL  +  FV GAL GE V  ++   + K    +L ++L+ + 
Sbjct: 27  KKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAP 86

Query: 76  ERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQGY 134
           ER    C +Y +CGGC+LQHL    Q+  KQ+ L++ + + AG Q  A +AP+   + GY
Sbjct: 87  ERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGY 146

Query: 135 RRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPE 194
           RRRAR+++ WD K +QL++GFR + S+ I+ +  C VL   L ++L  L  +L   S+P+
Sbjct: 147 RRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQ 206

Query: 195 RLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAP 254
            LGHVEL  G    VLV RH+  L  +DQ RL  F  Q    L+L  E GE   V   A 
Sbjct: 207 ALGHVELFSGTAEAVLV-RHVAPLPAEDQARLQAFCEQANAQLWLQGE-GEPAPVDPAAQ 264

Query: 255 YCEETGS---RLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPL 311
                      L++ P  F+QVN  VN  M+ QAL WL     ERVLDLFCGLGNF LPL
Sbjct: 265 LGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPL 324

Query: 312 AKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDP 371
           A+QA+ VV VEGV  MV  A  NA+ N ++N  F+QA+L Q +    WA + F+ VLLDP
Sbjct: 325 ARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDP 384

Query: 372 ARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLE 431
            R GA  +V  ++ L A+R+VYVSCNPATLARD+Q L+ QG+RL++ G+LDMFP T+H+E
Sbjct: 385 PRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVE 444

Query: 432 SMALF 436
           +MALF
Sbjct: 445 AMALF 449