Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas sp. DMC3

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 98/370 (26%), Positives = 159/370 (42%), Gaps = 48/370 (12%)

Query: 99  AGQIHHKQQALSQLMVKF-AGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRR 157
           A Q+  K   L  L+  F A +     +P+    Q +R RA   L W +  ++    F +
Sbjct: 9   AEQLEAKVTRLRDLLAPFDAPEPTVFDSPL----QNFRLRAEFRL-WREGGERHYAMFSQ 63

Query: 158 KQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGH-------VELVKGDNTRVL 210
              +  + +   P+    +N L+P L A    W     L H       +  + GD   ++
Sbjct: 64  DDKRTPILIEEFPIASLRINQLMPQLKAA---WQASSALSHKLFQVEFLTTLAGD--AMI 118

Query: 211 VLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEE---TGSRLSFLP 267
            L +   L E      T  ++   L + ++  +   + V G+    E+   +G   S+  
Sbjct: 119 TLCYHRPLDEHWHAAATQLSAD--LGVSIIGRSKGKREVLGQDYVVEKLEVSGRTFSYRQ 176

Query: 268 SH--FIQVNRAVNQHMVVQALNWLEVSPQER---VLDLFCGLGNFTLPLAKQAQAVVGVE 322
               F Q N  VNQ M    LNW   +  +R   +L+L+CG GNFTLPLA + + V+  E
Sbjct: 177 PEGAFTQPNGTVNQKM----LNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATE 232

Query: 323 GVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSA-------------SWAQQKFAKVLL 369
                V  A  N   N ++NV   + + E ++T A                  +F+ V +
Sbjct: 233 ISKTSVNAALSNLSENAVDNVTLVRLSAE-ELTEALNEVRPFRRLHGIDLKSYEFSSVFV 291

Query: 370 DPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSH 429
           DP RAG +    +L+      ++Y+SCNP TLA +  + L    R+ K  M D FP T H
Sbjct: 292 DPPRAGMDPDTCELTR-RFDNILYISCNPDTLAANI-AQLHDTHRITKCAMFDQFPWTHH 349

Query: 430 LESMALFVKK 439
           +ES  L  ++
Sbjct: 350 MESGVLLTRR 359