Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  141 bits (355), Expect = 5e-38
 Identities = 120/462 (25%), Positives = 210/462 (45%), Gaps = 49/462 (10%)

Query: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79
           + IE +  +G  LA      +FV G  PG+ V +++T  K  +   + +   + S  RV 
Sbjct: 16  IKIEDMVAEGKCLARHDNMVIFVAGVAPGDVVDLRITRKKKSFLEAEPVAFHELSELRVQ 75

Query: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPV--CSDDQGYRRR 137
           PFC H+  CGGC  QH+    Q+H KQ+ +   + +     L    P+   ++ + YR +
Sbjct: 76  PFCEHFGTCGGCKWQHIGYDTQLHFKQKQVKDNLERIGKVPLPAFDPILGSANTRYYRNK 135

Query: 138 ARLSL---MWDKKTQQLQ---------LGFR-RKQSKAIVNVTHCPVLEPSLNALLPDLN 184
              +     W  K +Q+Q         LGF    +   I+++ HC +     NA+  ++ 
Sbjct: 136 LEYTFSNTSWLTK-EQIQSGQEFDRDALGFHIPGRFDKILDIKHCYLQPDPSNAIRLEVR 194

Query: 185 ALLSEWSQPERLGHVELVKGDN-TRVLVLR-----HLGALIEQDQQRLTDFASQNQLTLY 238
               ++++   L   ++VK +   R L++R      +  +++  + R  +  +  Q    
Sbjct: 195 ----DYAKKHDLPFFDIVKQEGYMRNLIIRTANTGEVMVIVQVYEDRPEEMEALMQHLAA 250

Query: 239 LMLEAGELQHVQGE----------------APYCEETGSRLSFL--PSHFIQVNRAVNQH 280
              E   LQ+V                    PY  E    + F   P  F Q N      
Sbjct: 251 TFPEITSLQYVVNSKGNETFHDLEVVCYKGLPYIHEDMEGIKFRVGPKSFYQTNADQAYE 310

Query: 281 MVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQI 340
           +  +      ++  E V DL+ G G     +A QA+ V+G+E V   ++ A  N+++N I
Sbjct: 311 LYKKTRELANLTGNELVYDLYTGAGTIANFVAHQAREVIGIEYVPSAIEDAKINSQINNI 370

Query: 341 NNVAFYQANLEQDMTSASWAQQ--KFAKVLLDPARAGA-EGIVDQLSALGAKRVVYVSCN 397
            N  FY  ++ +D+ S    ++  +   V+ DP RAG  E +V +L  +   R+VYVSCN
Sbjct: 371 TNTTFYAGDM-KDILSDELIERHGRPDVVITDPPRAGMHEDVVKKLLQVHPNRIVYVSCN 429

Query: 398 PATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 439
           PAT ARD +  LS+ + + ++  +DMFP T H+E++ L   +
Sbjct: 430 PATQARDVE-WLSEKYDVTRVQPVDMFPQTHHVENIVLLTAR 470