Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  240 bits (612), Expect = 8e-68
 Identities = 154/446 (34%), Positives = 232/446 (52%), Gaps = 29/446 (6%)

Query: 20  VTIERLDHQGSGLAFLHK-KPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERV 78
           + +E LD    G+A     K +F++GALP E+V + +   K+ +  G +  + + S++RV
Sbjct: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92

Query: 79  APFCAHYA----QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQG 133
            P C H+      CGGC +QHL  A Q+  KQ+ L   +      ++  L  P+     G
Sbjct: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152

Query: 134 YRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP 193
           YR RARLS+    K  ++ +GF  ++S+ + ++  CPVL P ++A+L  L  L+      
Sbjct: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDAR 212

Query: 194 ERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEA 253
           E    +EL  GD+   LVLRHL  L E D  RL  F +++ +  +L  +  +   +  E 
Sbjct: 213 ETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVKLLDEG 272

Query: 254 PYC-----EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFT 308
                    E G  + F P+ F QVN  +N+ +VV+AL  L+    ERV+D FCGLGNFT
Sbjct: 273 GEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNFT 332

Query: 309 LPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINN------VAFYQANLEQDMTSASWAQQ 362
           LP+A  A  V+G+EG + +V  +  N   NQ           F   NL +       A  
Sbjct: 333 LPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLFEMTPELLVADG 392

Query: 363 KFAKVLLDPARAGAEGIVDQLSAL-----------GAKRVVYVSCNPATLARDSQSLLSQ 411
              K L+DP R GA  +   ++ L             +R+VYVSCNPATLARD+  L+ Q
Sbjct: 393 VAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLARDAGLLVHQ 452

Query: 412 -GFRLEKLGMLDMFPHTSHLESMALF 436
            G+R    G+++MF HT+H+ESMA+F
Sbjct: 453 AGYRCVTAGVVNMFAHTAHVESMAVF 478