Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., class I SAM-dependent RNA methyltransferase from Magnetospirillum magneticum AMB-1

 Score =  155 bits (391), Expect = 3e-42
 Identities = 130/435 (29%), Positives = 204/435 (46%), Gaps = 43/435 (9%)

Query: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79
           +T++++  +G G+A L  + +FV   + G+ VL ++   +       LI+VL+P   R  
Sbjct: 23  LTVDQVGARGDGIARLDGETVFVPFTVAGDRVLARVEGKRGDGLTAALIEVLEPGPGRAT 82

Query: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           P CAHY +CGGC LQHLD A     K+  L   + +  G + A+  P+       RRRA 
Sbjct: 83  PPCAHYGRCGGCSLQHLDDALYAEWKRDLLVTQLAR-QGLAEAIVEPLVRIPPASRRRA- 140

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHV 199
            +  + +    + LGF  + S  +V++  CP+L+P+L   LP L  LL         G  
Sbjct: 141 -TFAFTRAKGAIVLGFNGRASHTVVDIERCPLLDPALGDALPGLRKLLG--------GIA 191

Query: 200 ELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET 259
               GD T  L    L  L+E    RL  F  +        L+   L   +      E  
Sbjct: 192 IEGGGDLTLTLTEGGLDVLVEA-PARLDLFERETLAEAAASLDLARLHWRRPGTGLVEPI 250

Query: 260 GSRLSFL-----------PSHFIQVNRAVNQHMVVQALNWLEVSPQE-RVLDLFCGLGNF 307
             R + L           P  F+Q  R   +  + +A+  L  +P++  V DL+ G G+F
Sbjct: 251 ARRRAALVHFGGIAVEPAPGGFLQPTRG-GELAIAEAI--LSATPKDVPVADLYSGCGSF 307

Query: 308 TLPLAKQ--AQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQK-- 363
           +LPLA +   +AV G +G    ++ A   A L     V        +D+     A  +  
Sbjct: 308 SLPLALRGPVRAVEGEQGPVAALEAAARAASLPLTAEV--------RDLARRPLAAHELK 359

Query: 364 -FAKVLLDPARAGAEGIVDQL---SALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLG 419
            F  ++LDP RAGA     +L   S  G   +  VSCNPATLARD ++L   G+R++++ 
Sbjct: 360 GFRAIVLDPPRAGAAAQAAELARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVV 419

Query: 420 MLDMFPHTSHLESMA 434
            +D FP ++HLE++A
Sbjct: 420 PIDQFPWSAHLEAVA 434