Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 267 PSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDE 326
           P  F Q N  V   +   A +W+   P   + DLFCG+G F L  A     + G+E   E
Sbjct: 207 PQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPE 266

Query: 327 MVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAG-AEGIVDQLSA 385
            +  A  +A    +  + F   +  Q  T+          VL++P R G  + + D L+ 
Sbjct: 267 AIACAKQSAAELGLTRLHFQALDSTQFATAQGETPD---LVLVNPPRRGIGKPLCDYLAQ 323

Query: 386 LGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMAL 435
           +  + ++Y SCN  T+A+D + L    +R++++ + DMFPHT+H E +AL
Sbjct: 324 MAPRFIIYSSCNAQTMAQDIRHL--PNYRIQRVQLFDMFPHTAHYEVLAL 371