Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  373 bits (957), Expect = e-108
 Identities = 207/438 (47%), Positives = 277/438 (63%), Gaps = 12/438 (2%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIE--RLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTEN 58
           MA+F+  K+  T     Q +T++   LD  G G+A  + K LF+ G LP E   + +TE+
Sbjct: 1   MAQFYSAKRRVTT---RQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITED 57

Query: 59  KSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG 118
           K ++AR ++ + L  S ER  P C H+  CGGC  QH+  A Q   K  AL++LM K   
Sbjct: 58  KKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLM-KHEV 116

Query: 119 QSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNA 178
             +   AP      GYRRRARLSL      + LQ+GFR+  S  IVNV  CPVL P L A
Sbjct: 117 NDIIAGAP-----WGYRRRARLSLNCPPD-KPLQMGFRKAGSSDIVNVEQCPVLAPQLAA 170

Query: 179 LLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
           LLP + A L+       LGHVELV+  +  +++LRH   L   D+++L  F+    L+L+
Sbjct: 171 LLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLF 230

Query: 239 LMLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVL 298
           L   +  L+ V GEAP+ +  G RL+F P  FIQVN AVNQ MV +AL WL+V  ++RVL
Sbjct: 231 LAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVL 290

Query: 299 DLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSAS 358
           DLFCG+GNFTLPLA +A +V+GVEGV  +V+    NA  N ++NV F+  NLE+D+T   
Sbjct: 291 DLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQP 350

Query: 359 WAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKL 418
           WA+  F KVLLDPARAGA G++  +  L   R+VYVSCNPATLARDS++L++ G+ + +L
Sbjct: 351 WAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRL 410

Query: 419 GMLDMFPHTSHLESMALF 436
            MLDMFPHT HLESM LF
Sbjct: 411 AMLDMFPHTGHLESMVLF 428