Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 42/367 (11%)

Query: 101 QIHHKQQALSQLMVKFAGQ-SLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQ 159
           Q+  K   L  +M  F+G       +PV      YR RA   L W        + F + Q
Sbjct: 14  QLAEKVARLQSMMAPFSGLVPEVFRSPVSH----YRMRAEFRL-WHDGDDLYHIMFDQ-Q 67

Query: 160 SKAIVNVTHCPVLEPSLNALLPDLNA-LLSEWSQPERLGHVE-LVKGDNTRVLVLRHLGA 217
           +K+ + V   P     +N L+  + A +    +   +L  ++ L    N  V+ L +   
Sbjct: 68  TKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYHKK 127

Query: 218 LIEQDQQRLT---DFASQNQLTLYLMLEAGELQHVQGEAPYCEE----TGSRLSF--LPS 268
           L E+ ++  T   D      L ++L+  A + + ++ +  Y +E     G  + +  + +
Sbjct: 128 LDEEWREAATALRDALRAQGLNVHLIGRATKTK-IELDQDYIDERLPVAGKEMIYRQVEN 186

Query: 269 HFIQVNRAVNQHMVVQALNW-LEVSPQER--VLDLFCGLGNFTLPLAKQAQAVVGVEGVD 325
            F Q N A+N    +Q L W LEV+   +  +L+L+CG GNF+L LA+    V+  E   
Sbjct: 187 SFTQPNAAMN----IQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAK 242

Query: 326 EMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLLDPA 372
             V  A +N   N I+NV   +   E + T A    ++F +             + +DP 
Sbjct: 243 PSVAAAQYNIAANHIDNVQIIRMAAE-EFTQAMNGVREFNRLQGIDLKRYQCETIFVDPP 301

Query: 373 RAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLES 432
           R+G +   +++      R++Y+SCNP TL ++ ++ LSQ   + +L + D FP+T H+E 
Sbjct: 302 RSGLDSETEKM-VQAYPRILYISCNPETLCKNLET-LSQTHTVSRLALFDQFPYTHHMEC 359

Query: 433 MALFVKK 439
             L   +
Sbjct: 360 GVLLTAR 366