Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil-5-)-methyltransferase (NCBI) from Escherichia coli BW25113

 Score = 87.4 bits (215), Expect = 7e-22
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 24/238 (10%)

Query: 221 QDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEE----TGSRLSF--LPSHFIQVN 274
           Q+ + L D      L ++L+  A + + ++ +  Y +E     G  + +  + + F Q N
Sbjct: 134 QEAEALRDALRAQNLNVHLIGRATKTK-IELDQDYIDERLPVAGKEMIYRQVENSFTQPN 192

Query: 275 RAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHN 334
            A+N  M+  AL+  + S  + +L+L+CG GNF+L LA+    V+  E     V  A +N
Sbjct: 193 AAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYN 251

Query: 335 AKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLLDPARAGAEGIVD 381
              N I+NV   +   E + T A    ++F +             + +DP R+G +   +
Sbjct: 252 IAANHIDNVQIIRMAAE-EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE 310

Query: 382 QLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 439
           ++      R++Y+SCNP TL ++ ++ LSQ  ++E+L + D FP+T H+E   L   K
Sbjct: 311 KM-VQAYPRILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHMECGVLLTAK 366