Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA m(5)U747-methyltransferase (NCBI) from Escherichia coli BW25113

 Score =  101 bits (252), Expect = 3e-26
 Identities = 98/380 (25%), Positives = 160/380 (42%), Gaps = 29/380 (7%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C         Q+  K   L  L+  F  +     APV   +QG+R +A+
Sbjct: 3   CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV-LEPSLNALLP----------------- 181
           + +    +   L +  R    + + +    P    P   AL P                 
Sbjct: 61  MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120

Query: 182 DLNALLSEWSQPERLGHVELVKGDNTRVLVLRH-LGALIEQDQQRLTDFASQNQLTLYLM 240
           +L  +L   SQ +    +  V   +T++  LR  L  L EQ  Q      +   + + +M
Sbjct: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180

Query: 241 LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
               E+   + +A         L   P  F Q N AV   +   A +W+   P + + DL
Sbjct: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA 360
           FCG+G F L  A     + G+E   E +  A  +A    +  + F   +  Q  T+    
Sbjct: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300

Query: 361 QQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLG 419
            +    VL++P R G  + + D LS +  + ++Y SCN  T+A+D + L   GFR+E++ 
Sbjct: 301 PE---LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355

Query: 420 MLDMFPHTSHLESMALFVKK 439
           + DMFPHT+H E + L VK+
Sbjct: 356 LFDMFPHTAHYEVLTLLVKQ 375