Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Kangiella aquimarina DSM 16071

 Score =  350 bits (897), Expect = e-101
 Identities = 186/445 (41%), Positives = 260/445 (58%), Gaps = 20/445 (4%)

Query: 8   KKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQL 67
           ++   L T+    +I    H+G G+  +  K +FVD AL GE+V  Q TE + K+  G  
Sbjct: 5   RRRKPLPTEPVRASIHAFSHEGRGICSVEGKTVFVDNALKGEDVSFQYTEKRGKFDEGVA 64

Query: 68  IKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS-----LA 122
           I++   S +RV P C H   CGGC LQH+    QIHHKQ  L +    F G S       
Sbjct: 65  IEIHSSSEDRVTPPCEHADICGGCSLQHMSNPAQIHHKQNVLVEQFEHFGGYSHKNGDYE 124

Query: 123 LSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPD 182
           L  P+ +D  GYRR+ARL + +  K     +GFR K+S  + N+  C VL+P +  L+  
Sbjct: 125 LVEPLQADVLGYRRKARLGVKYVPKKGGALVGFREKRSNFLANIDSCLVLDPRVGQLITP 184

Query: 183 LNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLE 242
           L  ++SE    ++   +E+  GD+   LV+RHL  L E+DQ    +F  ++ L +YL  +
Sbjct: 185 LKNMISELDSNDKTAQLEVAMGDDQVALVVRHLVPLTEKDQNLWIEFGKEHGLYIYLQPK 244

Query: 243 AGELQHVQGEAPYCEETGSRLS-----------FLPSHFIQVNRAVNQHMVVQALNWLEV 291
             +  H+     Y  +T   LS           F P  F QVN ++NQ MV +A+ WLE 
Sbjct: 245 GPDTVHLL----YGPDTRDWLSYRFDDYDVEMLFHPMDFTQVNASINQKMVKRAIEWLEP 300

Query: 292 SPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLE 351
             ++R+LDLFCGLGNFT+PLA QAQ VVGVEG + MV+    NAK N ++NV F+  NL+
Sbjct: 301 KAEDRILDLFCGLGNFTIPLATQAQNVVGVEGSEAMVERGQMNAKHNNLSNVEFHATNLQ 360

Query: 352 QDMTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQ 411
            D T   WAQQ F K+L+DP R+GA  +V  ++    +R+VYVSCNPATLARD+  L  +
Sbjct: 361 DDFTQEEWAQQGFNKILIDPPRSGALDVVQNITRFNPERIVYVSCNPATLARDAGELKER 420

Query: 412 GFRLEKLGMLDMFPHTSHLESMALF 436
           G++L K G++DMFPHTSH ES+ALF
Sbjct: 421 GYKLVKAGVMDMFPHTSHTESIALF 445