Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Erwinia tracheiphila SCR3

 Score =  106 bits (265), Expect = 1e-27
 Identities = 105/381 (27%), Positives = 170/381 (44%), Gaps = 37/381 (9%)

Query: 81  FCAHYA--QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAP-VCSDDQGYRRR 137
           +CA Y   +C  C    +  A QI  K++ L QL+   AGQS A   P V S +QG+R +
Sbjct: 2   YCALYNADRCHSCQWLSVPYASQIERKEEMLRQLL---AGQSSAQWLPSVTSVEQGFRNK 58

Query: 138 ARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSE-----WSQ 192
           A++ +    + ++  LG   +     V++  CP+   S  A+   L   +++     ++ 
Sbjct: 59  AKMVV--SGRVERPVLGLMHRDGYP-VDLCACPLYPDSFAAVFARLKPFIAQAGLTPYNV 115

Query: 193 PERLGHVE---LVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHV 249
            +R G ++   L +  +T  L+LR +    E+  Q      +  Q   +L + +  +Q V
Sbjct: 116 AKRRGELKFILLTESRHTGQLMLRFVLRSKEKIAQLTQALPALQQQLPHLSVVSANIQPV 175

Query: 250 -------QGEAPYCEETGSR-------LSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQE 295
                    E P  E            L   P  F Q N  V   +   A  W+      
Sbjct: 176 PMAILEGDEEIPITENQSLAEQLNDVPLWIRPQSFFQTNPEVAALLYATARQWVSELGVR 235

Query: 296 RVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMT 355
            + DLFCG+G F L  A     + G+E   E +  A  +A   +++ V+F   +   D  
Sbjct: 236 TMWDLFCGVGGFGLHCASPEMQLTGIEISAEAINCARRSATAMKLDKVSFAALD-STDFA 294

Query: 356 SASWAQQKFAKVLLDPARAGAEGIVDQ-LSALGAKRVVYVSCNPATLARDSQSLLSQGFR 414
           S   A  +   VL++P R G    + Q LS++G K ++Y SCN  TLA D    L   ++
Sbjct: 295 SGENATPEL--VLVNPPRRGIGAQLCQWLSSMGPKWILYSSCNAQTLAID--IALMSDYK 350

Query: 415 LEKLGMLDMFPHTSHLESMAL 435
           LEK+ + D+FPHT H E + L
Sbjct: 351 LEKVQLFDIFPHTGHSEVLTL 371