Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Erwinia tracheiphila SCR3

 Score =  397 bits (1019), Expect = e-115
 Identities = 204/440 (46%), Positives = 285/440 (64%), Gaps = 2/440 (0%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS 60
           MA+F+  K+  T     + V I+ LD  G G+  ++ K LF+ GALPGE V +++ + KS
Sbjct: 1   MAQFYSAKRCVTTRQIIR-VMIDELDGLGQGVGRINGKALFISGALPGECVEVEIVQEKS 59

Query: 61  KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS 120
            +ARG+  ++L  S+ERVAP C ++ +CGGC +QH     Q   K  ALS+++ +  G  
Sbjct: 60  SWARGKTTRILSASSERVAPRCPYFGRCGGCQIQHASSTLQQQSKANALSRMLSQKNGVP 119

Query: 121 LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKA-IVNVTHCPVLEPSLNAL 179
           + +   +  +  GYRRRARLSL +DK++Q +Q+GFR+  S   +V V  CPVL+P LNAL
Sbjct: 120 VVIDNIIAGEPYGYRRRARLSLYFDKRSQTVQMGFRQVASSGELVTVMQCPVLKPELNAL 179

Query: 180 LPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYL 239
           +P L+ LL+      RLGHVELV  DN  +LVLRHL AL   D+++L  F+  N + L+L
Sbjct: 180 IPHLHQLLNSLQVARRLGHVELVLADNGPLLVLRHLDALSRADKEKLEQFSHNNHVALFL 239

Query: 240 MLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLD 299
             ++  L  V GE P+       L+F P  FIQVN  +N+ MV QAL WL++ P++ +LD
Sbjct: 240 APDSDALLQVNGELPFYRINDLTLTFSPRDFIQVNGELNEKMVNQALVWLDIQPEDWLLD 299

Query: 300 LFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASW 359
           LFCG+GNFTLP  KQ + V GVEGV  +V  A  NA+ N +NNV F+Q NL++D+    W
Sbjct: 300 LFCGMGNFTLPAGKQVKNVTGVEGVATLVGQAVRNAEKNNLNNVDFFQHNLDEDVVKQPW 359

Query: 360 AQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLG 419
           A + F KVLLDP RAGA   +  +  L  ++VVYVSCNP TL RDSQ+LL+ G+ LE++ 
Sbjct: 360 AAKGFNKVLLDPPRAGAAAGMSHIIKLAPQKVVYVSCNPTTLTRDSQTLLASGYELERVS 419

Query: 420 MLDMFPHTSHLESMALFVKK 439
           + DMFPHT H+ESM LF +K
Sbjct: 420 LFDMFPHTGHVESMVLFSRK 439