Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Enterobacter asburiae PDN3

 Score =  394 bits (1012), Expect = e-114
 Identities = 211/438 (48%), Positives = 284/438 (64%), Gaps = 11/438 (2%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIER--LDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTEN 58
           MA+F+  K+  T     Q +T+E   LD  G G+A  + K LF+ G LP E   I LTE+
Sbjct: 1   MAQFYSAKRRVTT---RQIITVEATDLDPFGQGVARHNGKALFITGLLPTERAEITLTED 57

Query: 59  KSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG 118
           K ++ARGQ+ + L  S ERV P C ++  CGGC  QH     Q   K +AL++ +     
Sbjct: 58  KRQFARGQVKRRLNDSPERVKPRCPYFGVCGGCQQQHASTELQQKSKSRALARQLKHDVN 117

Query: 119 QSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNA 178
           + L+          GYRRRARLSL +  KT +L++GFR+  S  IV+V  CP+L P L A
Sbjct: 118 EILS------DVPWGYRRRARLSLSYQPKTARLEMGFRKAGSSDIVDVQQCPILAPHLEA 171

Query: 179 LLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
           LLP++   LS       LGHVELV  +N  ++VLRH   L ++D+++L  F+  + L L+
Sbjct: 172 LLPEVRTCLSGLDGVRHLGHVELVMANNGPLMVLRHTAPLSKKDREKLERFSHSHDLALF 231

Query: 239 LMLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVL 298
           L  ++  L+ V GEAP+    G RL+F P  FIQVN  VNQ MV +AL WL+V   +RVL
Sbjct: 232 LAPQSEILEQVTGEAPWYASNGLRLTFSPRDFIQVNDGVNQLMVEKALTWLDVQKSDRVL 291

Query: 299 DLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSAS 358
           DLFCG+GNFTLPLA++A +VVGVEGV+ +V     NA+ N + NV F+  NLE+D+T   
Sbjct: 292 DLFCGMGNFTLPLAREAASVVGVEGVEALVAKGQENAQQNGLQNVTFFHQNLEEDVTQQP 351

Query: 359 WAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKL 418
           WA+Q F K+LLDPARAGA G++  +  L  KRVVYVSCNPATLARDS++L+S G+++++L
Sbjct: 352 WAKQGFDKILLDPARAGAPGVMAHIIKLAPKRVVYVSCNPATLARDSEALISAGYQIQRL 411

Query: 419 GMLDMFPHTSHLESMALF 436
            MLDMFPHT HLESM LF
Sbjct: 412 AMLDMFPHTGHLESMVLF 429