Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil-5-)-methyltransferase RumB from Enterobacter asburiae PDN3

 Score =  109 bits (272), Expect = 2e-28
 Identities = 107/386 (27%), Positives = 169/386 (43%), Gaps = 43/386 (11%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C       + Q+  K   L QL+   A       APVC  +QG+R +A+
Sbjct: 3   CALYDAGRCRSCQWIEQPVSQQLTAKMADLQQLLAAHAVGEWC--APVCGPEQGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV----LEPSLNALLPDL-NALLSEWSQPE 194
           + +    +   L +  R    +   ++T CP+     EP   AL P +  A L+ +S   
Sbjct: 61  MVVSGSVEKPLLGMLHRDGTPE---DLTDCPLYPASFEPVFAALKPFIARAGLTPYSVAR 117

Query: 195 RLGHV--------ELVKGDNTRVLV-----LRHLGALIEQDQQRLTDFA--SQNQLTLYL 239
           R G +        +L  G   R ++     L  L A +   Q++L      + N   +++
Sbjct: 118 RRGELKYLLLTESQLDGGMMLRFVLRSETKLEQLRAALPWLQEQLPQLKVITANVQPVHM 177

Query: 240 MLEAGEL------QHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSP 293
            +  GE       QH   E+      G  L   P  F Q N  V   +   A +W+    
Sbjct: 178 AIMEGEKEIFFTDQHALAES----FNGVPLWIRPQSFFQTNPTVASSLYATARDWVRALN 233

Query: 294 QERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQD 353
            + + DLFCG+G F L  A     + G+E   E +  A  +A    + N+ F   +  Q 
Sbjct: 234 IQHMWDLFCGVGGFGLHCATPEMQLTGIEISAEAIACAKQSAAGLGLTNLHFQALDSTQF 293

Query: 354 MTSASWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQG 412
            T      +    VL++P R G  + + D LS +  + +VY SCN  T+A+D  SL   G
Sbjct: 294 ATGQGNVPE---LVLVNPPRRGIGKSLCDYLSQMAPEYIVYSSCNAQTMAKDIGSL--PG 348

Query: 413 FRLEKLGMLDMFPHTSHLESMALFVK 438
           +R+E++ + DMFPHT+H E + L VK
Sbjct: 349 YRIERVQLFDMFPHTAHYEVLTLLVK 374