Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Escherichia coli ECRC62

 Score =  101 bits (252), Expect = 3e-26
 Identities = 99/381 (25%), Positives = 167/381 (43%), Gaps = 31/381 (8%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C         Q+  K   L  L+  F  +     APV   +QG+R +A+
Sbjct: 3   CALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV-LEPSLNALLPDL-NALLSEWSQPERLG 197
           + +    +   L +  R    + + +    P    P   AL P +  A L+ ++   + G
Sbjct: 61  MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120

Query: 198 HVELV-----KGDNTRVL--VLRHLGALIE--------QDQQRLTDFASQNQLTLYLMLE 242
            ++ +     + D   +L  VLR    L +        Q+Q       + N   +++ + 
Sbjct: 121 ELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQEQLPQLKVITVNIQPVHMAIM 180

Query: 243 AGELQHVQGEAPYCEETGSR--LSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
            GE +    E     E  +   L   P  F Q N AV   +   A +W+   P + + DL
Sbjct: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA 360
           FCG+G F L  A     + G+E   E +  A  +A    +  + F       D T  + A
Sbjct: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL----DSTQFATA 296

Query: 361 QQKFAK-VLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKL 418
           Q +  + VL++P R G  + + D LS +  + ++Y SCN  T+A+D + L   G+R+E++
Sbjct: 297 QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGYRIERV 354

Query: 419 GMLDMFPHTSHLESMALFVKK 439
            + DMFPHT+H E + L VK+
Sbjct: 355 QLFDMFPHTAHYEVLTLLVKQ 375