Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Dickeya dianthicola ME23

 Score = 94.0 bits (232), Expect = 7e-24
 Identities = 99/363 (27%), Positives = 167/363 (46%), Gaps = 34/363 (9%)

Query: 101 QIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQS 160
           Q+  K   L  +M  F   + A+     S    YR RA   + W        + F + Q+
Sbjct: 14  QLEEKTGRLGAMMAPFDAPAPAVFRSPVSH---YRMRAEFRI-WHDGDDLYHIIFDQ-QT 68

Query: 161 KAIVNVTHCPVLEPSLNALLPDL-NALLSEWSQPERLGHVELVKGDNTRVLV-LRHLGAL 218
           K  + V   P     +N L+P L +AL +E     +L  ++ +   +  + V L +  AL
Sbjct: 69  KQRIRVDQFPAASELINRLMPALLSALRAEPVLRRKLFQIDYLSTLSGEIAVSLLYHKAL 128

Query: 219 IEQDQQR---LTDFASQNQLTLYLMLEAGELQHVQGEAPYCEE----TGSRLSF--LPSH 269
            ++ QQ    L D   +    L LM  A + + +  +  Y +E     G ++ +  + + 
Sbjct: 129 DDEWQQHARLLRDQLREQGFALQLMGRATKTK-ICLDRDYVDECLPVAGRQMIYRQVENS 187

Query: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
           F Q N  +N  M+  AL+  + S  + +L+L+CG GNF+L LA+  + V+  E     V 
Sbjct: 188 FTQPNAMMNIQMLEWALSVTQGSTGD-LLELYCGNGNFSLALARNFERVLATEIAKPSVA 246

Query: 330 HATHNAKLNQINNVAFYQANLEQDMTSASWAQQ------------KFAKVLLDPARAGA- 376
            A +N   NQI+NV   +   E+   + +  +Q            +   + +DP R+G  
Sbjct: 247 AAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGLD 306

Query: 377 EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALF 436
           +G V  + A    R++Y+SCNP TL R +   LSQ  R+ +L + D FP+T H+E   L 
Sbjct: 307 DGTVKLVQAY--PRILYISCNPETL-RANLETLSQTHRISQLALFDQFPYTHHMECGVLL 363

Query: 437 VKK 439
            K+
Sbjct: 364 EKR 366